live reporting commit requests, resume prints batching

- Persist loop-active state for widget re-instantiation after session reload
- Add YAML task file parsing and update support via yaml library
- Auto-update PRD source file checkboxes on task status changes
- Add batchRender callback for real-time parallel widget animation
- Normalize tabs-to-spaces indentation across source files
- Use padStart(2, '0') for ID formatting instead of hardcoded prefix
- Enable parallel execution for single-task DAG batches

.gitignore

@@ -1,3 +1,3 @@
 node_modules
-dist
 .pi-lens
+package-lock.json

AGENTS.md

@@ -0,0 +1,62 @@
+# AGENTS.md
+
+## What this is
+
+A Pi coding agent extension that registers the `/ralpi` slash command. Not a standalone app — it runs inside Pi's extension host.
+
+## Type checking
+
+```
+npm run typecheck    # tsc --noEmit
+```
+
+No build step needed — Pi loads extensions via [jiti](https://github.com/unjs/jiti), which compiles TypeScript at runtime. `index.ts` is the entry point directly.
+
+## Entry point
+
+`index.ts` at repo root (not `src/`). Exports a default function receiving `ExtensionAPI`.
+
+## External dependencies
+
+The extension imports from Pi SDK packages (not in `package.json` — provided by the host):
+- `@earendil-works/pi-coding-agent` — `ExtensionAPI`, `ExtensionContext`, `createAgentSession`, etc.
+- `@earendil-works/pi-tui` — `Box`, `Text` for custom message renderer
+
+The only real npm dependency is `yaml` (^2.4.0).
+
+## Source structure
+
+- `index.ts` — extension entry, command routing, UI registration, reload detection
+- `src/` — all logic modules:
+  - `parser.ts` — task file parsing (Fio, checkbox, YAML formats)
+  - `dag.ts` — Kahn's algorithm dependency resolution, batch planning
+  - `executor.ts` — task execution, retry, parallel/sequential modes
+  - `progress.ts` — `.ralpi/progress.json` state management
+  - `prompts.ts` — prompt generation for spawned agent sessions
+  - `reflection.ts` — reflection extraction from agent output
+  - `utils.ts` — config loading, progress discovery, `runAgentSession()`
+  - `types.ts` — all interfaces and `DEFAULT_CONFIG`
+  - `widget-batcher.ts` — debounced widget updates for parallel tasks
+  - `constants.ts` — static constants
+- `skills/ralpi-use.md` — Pi skill definition for task execution
+- `prompts/task-manager.md` — Pi prompt for task planning
+
+## Runtime state
+
+All runtime state lives in `.ralpi/` in the **project directory** (not this extension directory):
+- `.ralpi/progress.json` — execution progress, supports multiple PRDs
+- `.ralpi/reflections/` — per-task reflection JSON files
+- `.ralpi/prompts/` — generated prompts (timestamped, for debugging)
+- `.ralpi/sessions/` — full session transcripts
+
+## Task ID convention
+
+Task IDs are zero-padded strings (`"01"`, `"02"`, etc.). The parser prepends `0` to parsed digits. Never use raw numeric IDs.
+
+## Command routing
+
+`/ralpi` with no args → plan. First token looks like a path (`@path`, `./path`, `.md`, etc.) → run. Otherwise dispatches to subcommand (`run`, `plan`, `resume`, `reset`).
+
+## Config
+
+Read from `.ralpi/config.yaml` in project directory. Falls back to `DEFAULT_CONFIG` in `src/types.ts` when file is missing. Config is loaded at `projectDir` level, not extension level.

LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 Michael Freno
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.md

@@ -1,78 +1,36 @@
-# ralph-loop
+# Ralpi
 
-Execute tasks from task files using DAG-based dependency resolution with persistent progress tracking.
+Execute tasks from task files until done using DAG-based dependency resolution with persistent progress tracking.
+
+```bash
+pi install npm:@mikefreno/ralpi
+```
 
 ## Features
 
-- **DAG-based execution**: Tasks are ordered by dependencies using Kahn's algorithm
 - **Parallel batching**: Independent tasks in each batch can run concurrently
-- **Persistent progress**: Execution state saved to `.ralph/progress.json`
+- **Persistent progress**: Execution state saved to `.ralpi/progress.json`
 - **Reflection system**: Each task produces a reflection for downstream tasks
 - **Retry with backoff**: Failed tasks retry with exponential backoff
-- **Multiple formats**: Supports Fio README, simple checkboxes, and YAML
-- **Chat progress**: Real-time progress messages in Pi chat via `pi.sendMessage`
+- **Multiple formats**: Supports simple checkboxes, and YAML
 - **Tool usage tracking**: Detects and reports tool usage (read, write, edit, bash) from task execution
-- **Git commit capture**: Captures git commit messages and generates summaries per task
 - **Configurable timeouts**: Task-level timeouts via meta blocks, with global fallback
 - **Session saving**: Saves full task output for expandable session review
 - **Resume auto-discovery**: Automatically finds and resumes interrupted execution
-- **Custom message renderer**: Compact UI labels with expandable details in Pi TUI
 
 ## Usage
 
 ```
-/ralph plan [task-file]   # Show execution plan
-/ralph run [task-file]    # Execute all tasks
-/ralph status [task-file] # Show current progress
-/ralph resume [task-file] # Resume paused execution
-/ralph next [task-file]   # Execute next batch only
-/ralph reset [task-file]  # Reset all progress
+/ralpi [task-file]  # Execute all tasks
+/ralpi plan         # Alias to /task-manager to plan new tasks
+/ralpi resume       # Resume paused execution
+/ralpi reset        # Reset progress and .ralpi directory - does not modify PRD
 ```
 
-## Task File Formats
-
-### Fio README Format
-
-```markdown
-# Project Title
+### Highly recommended to use the task-manager prompt for prd construction, it's output pairs perfectly - /task-manager or /ralpi plan
 
 ## Tasks
 
-- [ ] 01 — Setup project structure -> `tasks/01-setup.md`
-- [ ] 02 — Implement auth -> `tasks/02-auth.md`
-- [ ] 03 — Build API -> `tasks/03-api.md`
-
-## Dependencies
-
-1 -> 2,3
-2 -> 3
-```
-
-#### Supported Dependency Formats
-
-The parser supports two dependency declaration styles in the `## Dependencies` section:
-
-**Arrow Notation** (recommended):
-```
-1 -> 2,3,4
-5 -> 6
-```
-This means: "Task 1 must complete before tasks 2, 3, and 4 can start."
-
-**Natural Language**:
-```
-13 depends on 17, 18, 19, 20
-14 depends on 13, 15, 16
-```
-This means: "Task 13 depends on tasks 17, 18, 19, and 20."
-
-**Parallel Groups** (informational only):
-```
-1, 2, 3, 4 can be done in parallel
-5, 6, 7, 8 can be done in parallel
-```
-Note: These lines are ignored by the parser. Use explicit dependencies to control execution order.
-
 ### Simple Checkbox Format
 
 ```markdown
@@ -96,17 +54,47 @@ tasks:
     depends_on: ["01"]
 ```
 
-## Configuration
+## Task IDs
 
-Create `.ralph/config.yaml`:
+Task IDs are zero-padded 2-digit strings (`01`, `02`, ...) with an optional
+single lowercase letter suffix for sub-tasks inserted between two numbered
+steps (e.g. `02b`, `02c`). The parser normalizes `2b` → `02b`.
 
-```yaml
-maxRetries: 3
-retryDelayMs: 5000
-timeoutMs: 1800000
-maxParallel: 3
-projectContext: "Additional context for all tasks"
 ```
+- [ ] 01 — Setup
+- [ ] 02 — Fix bugs
+- [ ] 02b — Sub-step of 02 (inserted after the fact)
+- [ ] 02c — Another sub-step of 02
+- [ ] 03 — Continue
+```
+
+Use lettered sub-tasks when you discover mid-stream that a step needs to be
+split. They let you preserve sibling numbering (`01`, `02`, `03`, ...) while
+adding granularity between two existing steps.
+
+## Dependencies
+
+### Arrow Notation (recommended)
+
+1 -> 2,3,4
+5 -> 6
+This means: "Task 1 must complete before tasks 2, 3, and 4 can start."
+
+### Natural Language
+
+13 depends on 17, 18, 19, 20
+14 depends on 13, 15, 16
+
+This means: "Task 13 depends on tasks 17, 18, 19, and 20."
+
+### Parallel Groups (informational only)
+
+1, 2, 3, 4 can be done in parallel
+5, 6, 7, 8 can be done in parallel
+
+Note: These lines are ignored by the parser. Use explicit dependencies to control execution order.
+
+## Configuration
 
 ### Task-Level Timeout
 
@@ -119,9 +107,36 @@ You can set a timeout for individual tasks using a meta block in the task file:
 
 Supported formats: `10m` (minutes), `600s` (seconds), `3600000` (milliseconds)
 
+### Config files
+
+| Scope | Path |
+|-------|------|
+| **Global** | `~/.pi/ralpi/config.yaml` |
+| **Project** | `./.ralpi/config.yaml` |
+
+```yaml
+execution:
+  maxParallel: 3          # ralpi-level concurrency only
+  models:                 # round-robin in <provider>/<model> format
+    - google/gemini-3.5-flash # 1st and 3rd task in parallel
+    - openai/gpt-5.5 # 2nd task in parallel
+prompts:
+  projectContext: "Additional context for all tasks"
+```
+
+> `execution.models` uses slot-aware round-robin: with 3 models and 2 concurrent
+> tasks, only the first two models are used. The third model is only touched when
+> a third concurrent task starts. Freed model slots are reused before new ones
+> are allocated.
+> **Automatic failover**: if a provider/API is unreachable (rate limit, 503, etc.),
+> the task automatically cycles to the next model in the list without counting it
+> as a task failure. Each model is tried once before the task is marked as failed.
+> **NOTE**: this is only used in parallel execution, in sequential mode the
+> parent pi session's model is used
+
 ## State Files
 
-- `.ralph/progress.json` - Execution progress
-- `.ralph/reflections/` - Per-task reflections
-- `.ralph/prompts/` - Generated prompts
-- `.ralph/sessions/` - Full task output for review
+- `.ralpi/progress.json` - Execution progress
+- `.ralpi/reflections/` - Per-task reflections
+- `.ralpi/prompts/` - Generated prompts
+- `.ralpi/sessions/` - Full task output for review

bun.lock

@@ -0,0 +1,308 @@
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+  }
+}

package-lock.json

@@ -1,65 +0,0 @@
-{
-  "name": "ralph-loop",
-  "version": "1.0.0",
-  "lockfileVersion": 3,
-  "requires": true,
-  "packages": {
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-      "version": "1.0.0",
-      "dependencies": {
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-        "typescript": "^5.3.0"
-      }
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-    "node_modules/@types/node": {
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-      "resolved": "https://registry.npmjs.org/@types/node/-/node-20.19.41.tgz",
-      "integrity": "sha512-ECymXOukMnOoVkC2bb1Vc/w/836DXncOg5m8Xj1RH7xSHZJWNYY6Zh7EH477vcnD5egKNNfy2RpNOmuChhFPgQ==",
-      "dev": true,
-      "license": "MIT",
-      "dependencies": {
-        "undici-types": "~6.21.0"
-      }
-    },
-    "node_modules/typescript": {
-      "version": "5.9.3",
-      "resolved": "https://registry.npmjs.org/typescript/-/typescript-5.9.3.tgz",
-      "integrity": "sha512-jl1vZzPDinLr9eUt3J/t7V6FgNEw9QjvBPdysz9KfQDD41fQrC2Y4vKQdiaUpFT4bXlb1RHhLpp8wtm6M5TgSw==",
-      "dev": true,
-      "license": "Apache-2.0",
-      "bin": {
-        "tsc": "bin/tsc",
-        "tsserver": "bin/tsserver"
-      },
-      "engines": {
-        "node": ">=14.17"
-      }
-    },
-    "node_modules/undici-types": {
-      "version": "6.21.0",
-      "resolved": "https://registry.npmjs.org/undici-types/-/undici-types-6.21.0.tgz",
-      "integrity": "sha512-iwDZqg0QAGrg9Rav5H4n0M64c3mkR59cJ6wQp+7C4nI0gsmExaedaYLNO44eT4AtBBwjbTiGPMlt2Md0T9H9JQ==",
-      "dev": true,
-      "license": "MIT"
-    },
-    "node_modules/yaml": {
-      "version": "2.9.0",
-      "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.9.0.tgz",
-      "integrity": "sha512-2AvhNX3mb8zd6Zy7INTtSpl1F15HW6Wnqj0srWlkKLcpYl/gMIMJiyuGq2KeI2YFxUPjdlB+3Lc10seMLtL4cA==",
-      "license": "ISC",
-      "bin": {
-        "yaml": "bin.mjs"
-      },
-      "engines": {
-        "node": ">= 14.6"
-      },
-      "funding": {
-        "url": "https://github.com/sponsors/eemeli"
-      }
-    }
-  }
-}

package.json

@@ -1,17 +1,66 @@
 {
-  "name": "ralph-loop",
-  "version": "1.0.0",
-  "description": "Execute tasks from task files using DAG-based dependency resolution with persistent progress tracking",
-  "main": "dist/index.js",
+  "name": "@mikefreno/ralpi",
+  "version": "0.2.5",
+  "description": "Execute tasks from task files/PRD's using DAG-based dependency resolution with persistent progress tracking",
+  "keywords": [
+    "pi-package",
+    "pi-extension",
+    "task-runner",
+    "dag",
+    "task-manager",
+    "ralph-loop",
+    "prd"
+  ],
+  "author": "Michael Freno",
+  "license": "MIT",
+  "homepage": "https://github.com/mikefreno/ralpi",
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/mikefreno/ralpi.git"
+  },
+  "bugs": {
+    "url": "https://github.com/mikefreno/ralpi/issues"
+  },
+  "files": [
+    "index.ts",
+    "src/",
+    "skills/",
+    "prompts/",
+    "README.md",
+    "LICENSE"
+  ],
   "scripts": {
-    "build": "tsc",
-    "watch": "tsc --watch"
+    "typecheck": "tsc --noEmit",
+    "prepublishOnly": "tsc --noEmit",
+    "test": "bun test"
+  },
+  "engines": {
+    "bun": ">=1.1.0"
+  },
+  "pi": {
+    "extensions": [
+      "./index.ts"
+    ],
+    "skills": [
+      "./skills"
+    ],
+    "prompts": [
+      "./prompts"
+    ]
   },
   "dependencies": {
     "yaml": "^2.4.0"
   },
+  "peerDependencies": {
+    "@earendil-works/pi-coding-agent": "*",
+    "@earendil-works/pi-tui": "*"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
   "devDependencies": {
     "@types/node": "^20.0.0",
+    "bun-types": "^1.3.14",
     "typescript": "^5.3.0"
   }
 }

prompts/task-manager.md

@@ -0,0 +1,188 @@
+---
+name: task-manager
+description: Breaks down complex features into small, verifiable subtasks
+tools: read, edit, write, web_search, code_search, fetch_content, get_search_content, mcp, memory, skill, session_search, memory_search, ask_user_question, ctx_execute, ctx_execute_file, ctx_index, ctx_search, ctx_batch_execute
+systemPromptMode: replace
+inheritProjectContext: false
+inheritSkills: false
+defaultContext: fork
+---
+
+# Task Manager (@task-manager)
+
+Purpose:
+You are a Task Manager (@task-manager), an expert at breaking down complex software features into small, verifiable subtasks. Your role is to create structured task plans that enable efficient, atomic implementation work.
+
+## Core Responsibilities
+
+- Break complex features into atomic tasks
+- Create structured directories with task files and indexes
+- Generate clear acceptance criteria and dependency mapping
+- Follow strict naming conventions and file templates
+
+## Mandatory Two-Phase Workflow
+
+### Phase 1: Planning (Approval Required)
+
+When given a complex feature request:
+
+1. **Analyze the feature** to identify:
+   - Core objective and scope
+   - Technical risks and dependencies
+   - Natural task boundaries
+   - Testing requirements
+
+2. **Create a subtask plan** with:
+   - Feature slug (kebab-case)
+   - Clear task sequence and dependencies
+   - Exit criteria for feature completion
+
+3. **Present plan using this exact format:**```
+
+## Subtask Plan
+
+feature: {kebab-case-feature-name}
+objective: {one-line description}
+
+tasks:
+
+- seq: {2-digit}, filename: {seq}-{task-description}.md, title: {clear title}
+- seq: {2-digit}, filename: {seq}-{task-description}.md, title: {clear title}
+
+dependencies:
+
+- {seq} -> {seq} (task dependencies)
+
+exit_criteria:
+
+- {specific, measurable completion criteria}
+
+Approval needed before file creation.
+
+```
+
+4. **Wait for explicit approval** before proceeding to Phase 2.
+
+### Phase 2: File Creation (After Approval)
+Once approved:
+
+1. **Create directory structure:**
+   - Base: `tasks/{feature}/`
+   - Create feature README.md index
+   - Create individual task files
+
+2. **Use these exact templates (Dependencies only if applicable):**
+
+**Feature Index Template** (`tasks/{feature}/README.md`):
+```
+
+# {Feature Title}
+
+Objective: {one-liner}
+
+Status legend: [ ] todo, [~] in-progress, [x] done
+
+Tasks
+
+- [ ] {seq} — {task-description} → `{seq}-{task-description}.md`
+
+Dependencies
+
+- {seq} depends on {seq}
+
+Exit criteria
+
+- The feature is complete when {specific criteria}
+
+```
+
+**Task File Template** (`{seq}-{task-description}.md`):
+```
+
+# {seq}. {Title}
+
+meta:
+  id: {feature}-{seq}
+  feature: {feature}
+  priority: P2
+  depends_on: [{dependency-ids}]
+  tags: [implementation, tests-required]
+
+objective:
+
+- Clear, single outcome for this task
+
+deliverables:
+
+- What gets added/changed (files, modules, endpoints)
+
+steps:
+
+- Step-by-step actions to complete the task
+
+tests:
+
+- Unit: which functions/modules to cover (Arrange–Act–Assert)
+- Integration/e2e: how to validate behavior
+
+acceptance_criteria:
+
+- Observable, binary pass/fail conditions
+
+validation:
+
+- Commands or scripts to run and how to verify
+
+notes:
+
+- Assumptions, links to relevant docs or design
+
+```
+
+3. **Provide creation summary:**
+```
+
+## Subtasks Created
+
+- tasks/{feature}/README.md
+- tasks/{feature}/{seq}-{task-description}.md
+
+Next suggested task: {seq} — {title}
+
+```
+
+## Strict Conventions
+- **Naming:** Always use kebab-case for features and task descriptions
+- **Sequencing:** 2-digits (01, 02, 03...) — optionally a single lowercase letter
+  suffix may be appended to insert a sub-task between two numbered steps without
+  renumbering siblings (e.g. `02b`, `02c` for sub-tasks of `02`). The parser
+  normalizes `2b` → `02b`.
+- **File pattern:** `{seq}-{task-description}.md`
+- **Dependencies:** Always map task relationships (if applicable)
+- **Tests:** Every task must include test requirements
+- **Acceptance:** Must have binary pass/fail criteria
+
+## Quality Guidelines
+- Keep tasks atomic and implementation-ready
+- Include clear validation steps
+- Specify exact deliverables (files, functions, endpoints)
+- Use functional, declarative language
+- Avoid unnecessary complexity
+- Ensure each task can be completed independently (given dependencies)
+
+## Available Tools
+You have access to: read,edit,write,grep,glob,patch (but NOT bash)
+You cannot modify: .env files, .key files, .secret files, node_modules, .git
+
+## Response Instructions
+- Always follow the two-phase workflow exactly
+- Use the exact templates and formats provided
+- Wait for approval after Phase 1
+- Provide clear, actionable task breakdowns
+- Include all required metadata and structure
+
+Break down the complex features into subtasks and create a task plan. Put all tasks in the /tasks/ directory.
+Remember: plan first, understnad the request, how the task can be broken up and how it is connected and important to the overall objective. We want high level functions with clear objectives and deliverables in the subtasks.
+
+---
+User request: $@

skills/ralpi-use.md

@@ -1,6 +1,10 @@
-# ralph-task
+---
+description: Executes individual tasks from ralpi task files using DAG-based dependency resolution, with progress tracking and reflection support
+---
 
-Execute a single task from a ralph task file.
+# ralpi-task
+
+Execute a single task from a ralpi task file.
 
 ## When to Use
 
@@ -11,9 +15,9 @@ Execute a single task from a ralph task file.
 ## Usage
 
 ```
-/ralph run [task-file]      # Run all tasks
-/ralph next [task-file]     # Run next batch
-/ralph status [task-file]   # Check progress
+/ralpi run [task-file]      # Run all tasks
+/ralpi next [task-file]     # Run next batch
+/ralpi status [task-file]   # Check progress
 ```
 
 ## Task File Location

src/constants.ts

@@ -1,11 +1,17 @@
-import type { RalphConfig } from "./types";
 import { DEFAULT_CONFIG } from "./types";
 
 export { DEFAULT_CONFIG };
 
 // CLI
-export const SLASH_COMMAND = "/ralph";
-export const COMMANDS = ["run", "plan", "status", "resume", "next", "reset"] as const;
+export const SLASH_COMMAND = "/ralpi";
+export const COMMANDS = [
+	"run",
+	"plan",
+	"status",
+	"resume",
+	"next",
+	"reset",
+] as const;
 
 // Task file detection
 export const TASK_FILE_NAMES = [

src/dag.ts

@@ -1,4 +1,38 @@
-import type { Task, ExecutionBatch, ExecutionPlan, Project } from "./types";
+import type {
+	Task,
+	ExecutionBatch,
+	ExecutionPlan,
+	Project,
+	ParallelGroup,
+} from "./types";
+
+// ─── Blocked Tasks ───────────────────────────────────────────────────────────
+
+/**
+ * Find tasks that are blocked (direct or transitive) due to failed dependencies.
+ * Returns a Set of blocked task IDs.
+ */
+export function getBlockedTasks(
+	pendingTasks: Task[],
+	failedTaskIds: Set<string>,
+): Set<string> {
+	const blocked = new Set<string>();
+
+	let changed = true;
+	while (changed) {
+		changed = false;
+		for (const task of pendingTasks) {
+			if (blocked.has(task.id)) continue;
+			const deps = task.dependencies || [];
+			if (deps.some((dep) => failedTaskIds.has(dep) || blocked.has(dep))) {
+				blocked.add(task.id);
+				changed = true;
+			}
+		}
+	}
+
+	return blocked;
+}
 
 // ─── Main Entry ──────────────────────────────────────────────────────────────
 
@@ -10,26 +44,46 @@ export function buildExecutionPlan(
 	project: Project,
 	completed: Set<string>,
 	parallelGroup?: number,
+	failedTaskIds: Set<string> = new Set(),
 ): ExecutionPlan {
-	const allTasks = new Map(project.tasks.map((t) => [t.id, t]));
+	// Filter out already completed AND failed tasks
+	// Failed tasks should not be re-scheduled — they're only re-attempted
+	// via the retry mechanism inside executeTask, not via the DAG.
+	const pendingTasks = project.tasks.filter(
+		(t) => !completed.has(t.id) && !failedTaskIds.has(t.id),
+	);
+	const skippedTasks = project.tasks.filter(
+		(t) => completed.has(t.id) || failedTaskIds.has(t.id),
+	);
 
-	// Filter out already completed tasks
-	const pendingTasks = project.tasks.filter((t) => !completed.has(t.id));
+	// With explicitly declared parallel groups, all groups are independent.
+	// Since there are no cross-group dependencies by definition, standard
+	// Kahn's algorithm produces the correct plan — tasks ready in any group
+	// appear in the same batch, and intra-group dependencies (e.g. "21 must
+	// be done before 22, 23, 24") are respected automatically.
+	// The parallel groups are preserved as metadata for display/documentation.
+	if (project.parallelGroups && project.parallelGroups.length > 0) {
+		return {
+			batches: buildGroupAwareBatches(project, pendingTasks, failedTaskIds),
+			totalTasks: pendingTasks.length,
+			skippedTasks,
+		};
+	}
 
-	// If parallel_group is explicitly set, use group-based batching
+	// If parallel_group is explicitly set (legacy config flag), use group-based batching
 	if (parallelGroup !== undefined) {
 		return {
-			batches: buildParallelGroupBatches(pendingTasks, allTasks, completed),
+			batches: buildParallelGroupBatchesLegacy(pendingTasks, failedTaskIds),
 			totalTasks: pendingTasks.length,
-			skippedTasks: project.tasks.filter((t) => completed.has(t.id)),
+			skippedTasks,
 		};
 	}
 
 	// Use dependency-based Kahn's algorithm
 	return {
-		batches: buildBatches(pendingTasks, allTasks, completed),
+		batches: buildBatches(pendingTasks, failedTaskIds),
 		totalTasks: pendingTasks.length,
-		skippedTasks: project.tasks.filter((t) => completed.has(t.id)),
+		skippedTasks,
 	};
 }
 
@@ -41,9 +95,18 @@ export function buildExecutionPlan(
 export function buildSequentialPlan(
 	project: Project,
 	completed: Set<string>,
+	failedTaskIds: Set<string> = new Set(),
 ): ExecutionPlan {
 	const pendingTasks = project.tasks.filter((t) => !completed.has(t.id));
-	const batches: ExecutionBatch[] = pendingTasks.map((task, i) => ({
+
+	// Mark tasks with failed dependencies as skipped
+	const blocked = getBlockedTasks(pendingTasks, failedTaskIds);
+	const skippedTasks = project.tasks.filter(
+		(t) => completed.has(t.id) || blocked.has(t.id),
+	);
+	const activeTasks = pendingTasks.filter((t) => !blocked.has(t.id));
+
+	const batches: ExecutionBatch[] = activeTasks.map((task, i) => ({
 		tasks: [task],
 		batchIndex: i,
 	}));
@@ -51,7 +114,7 @@ export function buildSequentialPlan(
 	return {
 		batches,
 		totalTasks: pendingTasks.length,
-		skippedTasks: project.tasks.filter((t) => completed.has(t.id)),
+		skippedTasks,
 	};
 }
 
@@ -59,12 +122,15 @@ export function buildSequentialPlan(
 
 function buildBatches(
 	pendingTasks: Task[],
-	allTasks: Map<string, Task>,
-	completed: Set<string>,
+	failedTaskIds: Set<string>,
 ): ExecutionBatch[] {
 	const batches: ExecutionBatch[] = [];
-	const done = new Set(completed);
-	const remaining = new Set(pendingTasks.map((t) => t.id));
+	const done = new Set<string>();
+	const blocked = getBlockedTasks(pendingTasks, failedTaskIds);
+	const pendingSet = new Set(pendingTasks.map((t) => t.id));
+	const remaining = new Set(
+		pendingTasks.filter((t) => !blocked.has(t.id)).map((t) => t.id),
+	);
 
 	while (remaining.size > 0) {
 		// Find tasks whose dependencies are all satisfied
@@ -74,7 +140,7 @@ function buildBatches(
 
 			const deps = task.dependencies || [];
 			const depsSatisfied = deps.every(
-				(dep) => done.has(dep) || !allTasks.has(dep),
+				(dep) => done.has(dep) || !pendingSet.has(dep),
 			);
 
 			if (depsSatisfied) {
@@ -100,20 +166,81 @@ function buildBatches(
 	return batches;
 }
 
-// ─── Parallel Group Batching ─────────────────────────────────────────────────
+// ─── Group-Aware Batching ────────────────────────────────────────────────────
 
 /**
- * Build batches from explicit parallel_group values.
- * Groups execute in ascending order; tasks within a group run concurrently.
+ * Build batches respecting both explicit parallel groups and intra-group
+ * dependencies. Since parallel group declarations imply no cross-group
+ * dependencies, all tasks whose dependencies are satisfied — across any
+ * group — can run concurrently in the same batch. This means groups
+ * "proceed independently" as the user specified: tasks from different
+ * groups can appear in the same batch when ready.
+ *
+ * Intra-group dependencies (e.g., "21 must be done before 22, 23, 24")
+ * are handled by Kahn's algorithm: if 21 has deps satisfied but 22 doesn't,
+ * only 21 appears in the current batch.
  */
-function buildParallelGroupBatches(
+function buildGroupAwareBatches(
+	_project: Project,
 	pendingTasks: Task[],
-	allTasks: Map<string, Task>,
-	completed: Set<string>,
+	failedTaskIds: Set<string>,
 ): ExecutionBatch[] {
+	const blocked = getBlockedTasks(pendingTasks, failedTaskIds);
+	const activeTasks = pendingTasks.filter((t) => !blocked.has(t.id));
+
+	// Standard Kahn's algorithm across ALL tasks — parallel groups are
+	// metadata for display, not scheduling constraints.
+	const pendingSet = new Set(pendingTasks.map((t) => t.id));
+	const done = new Set<string>();
+	const remaining = new Set(activeTasks.map((t) => t.id));
+	const batches: ExecutionBatch[] = [];
+
+	while (remaining.size > 0) {
+		const ready: Task[] = [];
+		for (const task of activeTasks) {
+			if (!remaining.has(task.id)) continue;
+			const deps = task.dependencies || [];
+			const depsSatisfied = deps.every(
+				(dep) => done.has(dep) || !pendingSet.has(dep),
+			);
+			if (depsSatisfied) {
+				ready.push(task);
+			}
+		}
+
+		if (ready.length === 0) {
+			throw new Error(
+				`Dependency cycle detected: ${Array.from(remaining).join(", ")}`,
+			);
+		}
+
+		batches.push({ tasks: ready, batchIndex: batches.length });
+		for (const task of ready) {
+			done.add(task.id);
+			remaining.delete(task.id);
+		}
+	}
+
+	return batches;
+}
+
+// ─── Legacy Parallel Group Batching ─────────────────────────────────────────
+
+/**
+ * Legacy: build batches from explicit parallel_group values only.
+ * Groups execute in ascending order; tasks within a group run concurrently.
+ * Does NOT respect intra-group dependencies.
+ */
+function buildParallelGroupBatchesLegacy(
+	pendingTasks: Task[],
+	failedTaskIds: Set<string>,
+): ExecutionBatch[] {
+	const blocked = getBlockedTasks(pendingTasks, failedTaskIds);
+	const activeTasks = pendingTasks.filter((t) => !blocked.has(t.id));
+
 	const groups = new Map<number, Task[]>();
 
-	for (const task of pendingTasks) {
+	for (const task of activeTasks) {
 		const group = task.parallelGroup ?? 0;
 		if (!groups.has(group)) groups.set(group, []);
 		groups.get(group)!.push(task);
@@ -121,7 +248,7 @@ function buildParallelGroupBatches(
 
 	const sortedGroups = Array.from(groups.entries()).sort((a, b) => a[0] - b[0]);
 
-	return sortedGroups.map(([groupNum, tasks], i) => ({
+	return sortedGroups.map(([_groupNum, tasks], i) => ({
 		tasks,
 		batchIndex: i,
 	}));
@@ -268,18 +395,125 @@ export function getCriticalPath(project: Project): Task[] {
 	return path;
 }
 
+// ─── Format Dependency Chain ─────────────────────────────────────────────────
+
+/**
+ * Format the dependency DAG as a tree for display.
+ * Rooted at tasks with no dependencies, showing what depends on what.
+ */
+export function formatDependencyChain(project: Project): string {
+	const taskMap = new Map(project.tasks.map((t) => [t.id, t]));
+	const lines: string[] = [];
+
+	lines.push("## Dependency Chain");
+	lines.push("");
+
+	if (project.tasks.length === 0) {
+		lines.push("(no tasks)");
+		return lines.join("\n");
+	}
+
+	// Build reverse dependency map: taskId → [dependent taskIds]
+	const dependents = new Map<string, string[]>();
+	for (const task of project.tasks) {
+		dependents.set(task.id, []);
+	}
+	for (const task of project.tasks) {
+		for (const dep of task.dependencies) {
+			if (dependents.has(dep)) {
+				dependents.get(dep)!.push(task.id);
+			}
+		}
+	}
+
+	// Root tasks: those with no dependencies
+	const roots = project.tasks.filter((t) => t.dependencies.length === 0);
+	const rendered = new Set<string>();
+
+	function renderNode(taskId: string, prefix: string, isLast: boolean): void {
+		const task = taskMap.get(taskId);
+		if (!task) return;
+
+		const alreadyRendered = rendered.has(taskId);
+		rendered.add(taskId);
+
+		const connector = prefix ? (isLast ? "└── " : "├── ") : "";
+
+		if (alreadyRendered) {
+			lines.push(`${prefix}${connector}${task.id} · ${task.title}`);
+			return;
+		}
+
+		const deps =
+			task.dependencies.length > 0
+				? ` ← needs ${task.dependencies.join(", ")}`
+				: " (root)";
+
+		lines.push(
+			`${prefix}${connector}${task.id} · ${task.title}${prefix ? "" : deps}`,
+		);
+
+		const children = (dependents.get(taskId) || [])
+			.filter((c) => c !== taskId)
+			.sort();
+
+		for (let i = 0; i < children.length; i++) {
+			const childPrefix = prefix + (isLast ? "    " : "│   ");
+			renderNode(children[i], childPrefix, i === children.length - 1);
+		}
+	}
+
+	for (let i = 0; i < roots.length; i++) {
+		renderNode(roots[i].id, "", i === roots.length - 1);
+	}
+
+	// Tasks not reached from any root (have deps but no root-traversable path)
+	const unreached = project.tasks.filter((t) => !rendered.has(t.id));
+	if (unreached.length > 0) {
+		lines.push("");
+		lines.push("Orphan tasks (dependencies not in task list):");
+		for (const t of unreached) {
+			const deps =
+				t.dependencies.length > 0
+					? ` ← needs ${t.dependencies.join(", ")}`
+					: "";
+			lines.push(`  ${t.id} · ${t.title}${deps}`);
+		}
+	}
+
+	return lines.join("\n");
+}
+
 // ─── Format Execution Plan ───────────────────────────────────────────────────
 
 /**
  * Format the execution plan for display
  */
-export function formatExecutionPlan(plan: ExecutionPlan): string {
+/**
+ * Format the execution plan for display, optionally with parallel group annotations
+ */
+export function formatExecutionPlan(
+	plan: ExecutionPlan,
+	parallelGroups?: ParallelGroup[],
+): string {
 	const lines: string[] = [];
 	lines.push("## Execution Plan");
 	lines.push("");
 	lines.push(`Total tasks: ${plan.totalTasks}`);
 	lines.push(`Batches: ${plan.batches.length}`);
 
+	// Build a lookup: taskId → group label
+	const groupLabel = new Map<string, string>();
+	if (parallelGroups) {
+		for (const g of parallelGroups) {
+			for (const id of g.taskIds) {
+				if (g.label) {
+					groupLabel.set(id, g.label);
+				}
+			}
+		}
+	}
+
 	if (plan.skippedTasks.length > 0) {
 		lines.push(
 			`Already completed: ${plan.skippedTasks.map((t) => t.id).join(", ")}`,
@@ -290,7 +524,14 @@ export function formatExecutionPlan(plan: ExecutionPlan): string {
 	for (const batch of plan.batches) {
 		lines.push(`### Batch ${batch.batchIndex + 1}`);
 		for (const task of batch.tasks) {
-			lines.push(`- ${task.id}: ${task.title}`);
+			const annotation = groupLabel.has(task.id)
+				? `  _(${groupLabel.get(task.id)})_`
+				: "";
+			const deps =
+				task.dependencies.length > 0
+					? `  ← needs ${task.dependencies.join(", ")}`
+					: "";
+			lines.push(`- ${task.id}: ${task.title}${annotation}${deps}`);
 		}
 		lines.push("");
 	}

src/parser.ts

@@ -1,6 +1,20 @@
 import * as fs from "node:fs";
 import * as path from "node:path";
-import type { Task, Project } from "./types";
+import type { Task, Project, ParallelGroup, Phase } from "./types";
+
+// Lazy-loaded yaml package
+let YAML_module: typeof import("yaml") | undefined;
+function loadYaml(): typeof import("yaml") {
+	if (YAML_module) return YAML_module;
+	try {
+		YAML_module = require("yaml");
+	} catch {
+		throw new Error(
+			"YAML parsing requires the 'yaml' package. Run: npm install yaml",
+		);
+	}
+	return YAML_module!;
+}
 
 // ─── Main Entry ──────────────────────────────────────────────────────────────
 
@@ -8,6 +22,7 @@ import type { Task, Project } from "./types";
  * Parse a task file (markdown or YAML) into a Project structure.
  * Supports:
  * - Fio README format (numbered tasks with dependency graph)
+ * - Phased format (## Phase N — Title sections with tasks and dependencies)
  * - Simple checkbox format (- [ ] task)
  * - YAML format (tasks: [...])
  */
@@ -22,7 +37,7 @@ export function parseTaskFile(filePath: string): Project {
 	}
 
 	// Markdown: detect format
-	if (hasDependenciesSection(content)) {
+	if (hasDependenciesSection(content) || hasPhaseHeadings(content)) {
 		return parseFioFormat(content, absolutePath, dir);
 	}
 	return parseSimpleCheckbox(content, absolutePath, dir);
@@ -30,8 +45,35 @@ export function parseTaskFile(filePath: string): Project {
 
 // ─── Fio Format Parser ───────────────────────────────────────────────────────
 
+/** Match both markdown heading (## Dependencies) and plain heading (Dependencies). */
+const DEP_HEADING_RE = /^(?:##\s+)?Dependencies\s*$/m;
+/** Match both markdown heading (## Tasks) and plain heading (Tasks). */
+const TASK_HEADING_RE = /^(?:##\s+)?Tasks\s*$/m;
+/** Match other markdown headings (## Something). */
+const ANY_MD_HEADING_RE = /^##\s/;
+/** Match phase headings: ## Phase 1 — Push-to-Talk MVP */
+const PHASE_HEADING_RE = /^\s*##\s+Phase\s+(\d+)\s*[—–:-]\s*(.+)$/i;
+/** Detect plain phase headings too: Phase 1 — Title (no ##) */
+const PHASE_HEADING_PLAIN_RE = /^Phase\s+(\d+)\s*[—–:-]\s*(.+)$/i;
+/**
+ * Detect a plain (non-markdown) section heading like "Exit criteria".
+ * A plain heading must:
+ *   - Start with a letter
+ *   - Contain only letters and spaces
+ *   - Have no colons (avoids matching "Objective:" and "Status legend:")
+ *   - Not be a task/dep line (doesn't start with "-")
+ */
+function isPlainSectionHeader(line: string): boolean {
+	const trimmed = line.trim();
+	return trimmed.length > 0 && /^[A-Za-z][A-Za-z\s]*$/.test(trimmed);
+}
+
 function hasDependenciesSection(content: string): boolean {
-	return /^##\s+Dependencies\s*$/m.test(content);
+	return DEP_HEADING_RE.test(content);
+}
+
+function hasPhaseHeadings(content: string): boolean {
+	return PHASE_HEADING_RE.test(content) || PHASE_HEADING_PLAIN_RE.test(content);
 }
 
 function parseFioFormat(
@@ -42,24 +84,57 @@ function parseFioFormat(
 	const lines = content.split("\n");
 	const tasks: Task[] = [];
 	const dependencies: Record<string, string[]> = {};
+	const parallelGroups: ParallelGroup[] = [];
+	const phases: Phase[] = [];
+	let currentPhase: number | null = null;
+	let currentPhaseTitle = "";
 	let inTasks = false;
 	let inDeps = false;
 
 	for (const line of lines) {
-		if (/^##\s+Tasks\s*$/m.test(line)) {
+		// Check for phase headings first
+		const phaseMatch =
+			line.match(PHASE_HEADING_RE) || line.match(PHASE_HEADING_PLAIN_RE);
+		if (phaseMatch) {
+			// Save previous phase if exists
+			if (currentPhase !== null) {
+				const phaseTaskIds = tasks
+					.filter((t) => t.phase === currentPhase)
+					.map((t) => t.id);
+				if (phaseTaskIds.length > 0) {
+					phases.push({
+						number: currentPhase,
+						title: currentPhaseTitle,
+						taskIds: phaseTaskIds,
+					});
+				}
+			}
+			// Start new phase
+			currentPhase = parseInt(phaseMatch[1], 10);
+			currentPhaseTitle = phaseMatch[2].trim();
 			inTasks = true;
 			inDeps = false;
 			continue;
 		}
-		if (/^##\s+Dependencies\s*$/m.test(line)) {
+
+		if (TASK_HEADING_RE.test(line)) {
+			inTasks = true;
+			inDeps = false;
+			continue;
+		}
+		if (DEP_HEADING_RE.test(line)) {
 			inTasks = false;
 			inDeps = true;
 			continue;
 		}
+		// Reset state on any other section heading — both ##-style and plain
+		// BUT NOT phase headings (already handled above)
 		if (
-			/^##\s/.test(line) &&
-			!/^##\s+Tasks/.test(line) &&
-			!/^##\s+Dependencies/.test(line)
+			(ANY_MD_HEADING_RE.test(line) || isPlainSectionHeader(line)) &&
+			!TASK_HEADING_RE.test(line) &&
+			!DEP_HEADING_RE.test(line) &&
+			!PHASE_HEADING_RE.test(line) &&
+			!PHASE_HEADING_PLAIN_RE.test(line)
 		) {
 			inTasks = false;
 			inDeps = false;
@@ -67,15 +142,17 @@ function parseFioFormat(
 		}
 
 		if (inTasks) {
-			// Match all tasks on a line (supports compact single-line formats)
+			// Match all tasks on a line (supports compact single-line formats).
+			// ID is digits optionally followed by a single lowercase letter
+			// (e.g. "01", "02b", "10c") — see normalizeTaskId for the shape.
 			const taskPattern =
-				/-+\s+\[(.)\]\s+(\d+)\s+[—–:-]\s+(.+?)(?:\s+(?=-+\s+\[)|\s*→\s*`([^`]+)`|$)/g;
+				/-+\s+\[(.)\]\s+(\d+[a-z]?)\s+[—–:-]\s+(.+?)(?:\s+(?=-+\s+\[)|\s*→\s*`([^`]+)`|$)/g;
 			let match: RegExpExecArray | null;
 			while ((match = taskPattern.exec(line)) !== null) {
 				const [, status, id, title, file] = match;
 				const timeoutMs = parseTimeoutFromLine(line);
 				tasks.push({
-					id: `0${id}`,
+					id: normalizeTaskId(id),
 					title: title.trim(),
 					description: undefined,
 					file: file || undefined,
@@ -83,65 +160,229 @@ function parseFioFormat(
 					dependencies: [],
 					timeoutMs,
 					index: tasks.length,
+					phase: currentPhase ?? undefined,
 				});
 			}
 		}
 
 		if (inDeps) {
-			// Format 2: Arrow notation with multiple targets
-			// "01 -> 02,03,06 (description)" means 02, 03, 06 depend on 01
-			const arrowMatch = line.match(/^(\d+)\s*->\s*([\d,\s]+?)(?:\s*\(|$)/);
-			if (arrowMatch) {
-				const [, from, targets] = arrowMatch;
-				const fromId = `0${from}`;
-				const targetIds = targets
+			// Arrow notation (supports both -> and unicode \u2192)
+			// "01 -> 02,03,06" means 02, 03, 06 depend on 01
+			// "02 \u2192 08" — single arrow with unicode
+			// "03 \u2192 04 \u2192 05" — chained: 04 depends on 03, 05 depends on 04
+			// "05, 07, 08 \u2192 13" — multi-prereq: 13 depends on 05, 07, 08
+			// Supports optional markdown list prefix: "- 01 -> 02,03,06"
+			const hasArrow = /->/.test(line) || /\u2192/.test(line);
+			if (hasArrow) {
+				// Strip optional list prefix and parenthetical description
+				const cleaned = line
+					.replace(/^(\s*[-*]\s+)?/, "")
+					.replace(/\s*\(.*\)\s*$/, "");
+
+				// Split on arrows to get segments
+				const segments = cleaned
+					.split(/->|\u2192/)
+					.map((s) => s.trim())
+					.filter(Boolean);
+
+				if (segments.length >= 2) {
+					for (let i = 0; i < segments.length - 1; i++) {
+						// Left segment: source(s) (comma-separated)
+						const fromIds = segments[i]
 							.split(",")
 							.map((t) => t.trim())
-					.filter((t) => t)
-					.map((t) => `0${t}`);
+							.filter((t) => /^\d+[a-z]?$/.test(t))
+							.map((t) => normalizeTaskId(t));
 
-				// Each target depends on the source
-				for (const toId of targetIds) {
+						// Right segment: target(s) (comma-separated)
+						const toIds = segments[i + 1]
+							.split(",")
+							.map((t) => t.trim())
+							.filter((t) => /^\d+[a-z]?$/.test(t))
+							.map((t) => normalizeTaskId(t));
+
+						for (const toId of toIds) {
 							if (!dependencies[toId]) dependencies[toId] = [];
+							for (const fromId of fromIds) {
+								if (!dependencies[toId].includes(fromId)) {
 									dependencies[toId].push(fromId);
 								}
 							}
+						}
+					}
+				}
+			}
 
 			// Format 1: Natural language "X depends on A, B, C"
-			const dependsMatch = line.match(/^(\d+)\s+depends\s+on\s+([\d,\s]+)/i);
+			// Supports optional markdown list prefix: "- 13 depends on 17, 18, 19"
+			// Also handles "also depends on": "- 08 also depends on 05, 06"
+			// The dep list char class includes lowercase letters so lettered IDs
+			// (e.g. "02b") don't truncate the capture. Per-id validation is
+			// done by the filter below, so trailing prose can't leak in.
+			const dependsMatch = line.match(
+				/^(?:\s*[-*]\s+)?(\d+[a-z]?)\s+(?:also\s+)?depends\s+on\s+([\d,\s a-z]+)/i,
+			);
 			if (dependsMatch) {
 				const [, taskId, depsList] = dependsMatch;
-				const taskIdPadded = `0${taskId}`;
+				const taskIdPadded = normalizeTaskId(taskId);
 				const depIds = depsList
 					.split(",")
 					.map((t) => t.trim())
-					.filter((t) => t)
-					.map((t) => `0${t}`);
+					.filter((t) => /^\d+[a-z]?$/.test(t))
+					.map((t) => normalizeTaskId(t));
 
 				if (!dependencies[taskIdPadded]) dependencies[taskIdPadded] = [];
-				dependencies[taskIdPadded].push(...depIds);
+				for (const depId of depIds) {
+					if (!dependencies[taskIdPadded].includes(depId)) {
+						dependencies[taskIdPadded].push(depId);
+					}
+				}
 			}
 
 			// Parse meta blocks for task configuration (timeout, etc.)
 			const metaMatch = line.match(
-				/^0?(\d+)\s+\[timeout\]\s*=?\s*(\d+)(?:m|min|s|ms)?/i,
+				/^0?(\d+[a-z]?)\s+\[timeout\]\s*=?\s*(\d+)(?:m|min|s|ms)?/i,
 			);
 			if (metaMatch) {
 				const [, taskId, value, unit] = metaMatch;
-				const task = tasks.find((t) => t.id === `0${taskId}`);
+				const task = tasks.find((t) => t.id === normalizeTaskId(taskId));
 				if (task) {
 					task.timeoutMs = parseTimeoutValue(Number(value), unit);
 				}
 			}
+
+			// Format 2: "X, Y, Z can be done in parallel (label)"
+			// "- 01, 02, 03, 04 can be done in parallel (Play Store prep)"
+			const parallelMatch = line.match(
+				/^(?:\s*[-*]\s+)?((?:0?\d+[a-z]?\s*,\s*)*0?\d+[a-z]?)\s+can\s+be\s+done\s+in\s+parallel(?:\s+\(([^)]+)\))?$/i,
+			);
+			if (parallelMatch) {
+				const [, idsStr, label] = parallelMatch;
+				const taskIds = idsStr
+					.split(",")
+					.map((t) => t.trim())
+					.filter((t) => /^\d+[a-z]?$/.test(t))
+					.map((t) => normalizeTaskId(t));
+
+				if (taskIds.length > 0) {
+					parallelGroups.push({
+						index: parallelGroups.length,
+						label: label ? label.trim() : undefined,
+						taskIds,
+					});
+				}
+			}
+
+			// Format 3: "A must be done before B, C" or "A, B must be done before C"
+			// "- 21 must be done before 22, 23, 24 (backend integration foundation)"
+			// "- 02, 03 must be done before 04"
+			const mustBeforeMatch = line.match(
+				/^(?:\s*[-*]\s+)?((?:0?\d+[a-z]?\s*,\s*)*0?\d+[a-z]?)\s+must\s+be\s+done\s+before\s+((?:0?\d+[a-z]?\s*,\s*)*0?\d+[a-z]?)(?:\s+\(([^)]+)\))?$/i,
+			);
+			if (mustBeforeMatch) {
+				const [, fromIdsStr, toIdsStr] = mustBeforeMatch;
+				const fromIds = fromIdsStr
+					.split(",")
+					.map((t) => t.trim())
+					.filter((t) => /^\d+[a-z]?$/.test(t))
+					.map((t) => normalizeTaskId(t));
+				const toIds = toIdsStr
+					.split(",")
+					.map((t) => t.trim())
+					.filter((t) => /^\d+[a-z]?$/.test(t))
+					.map((t) => normalizeTaskId(t));
+
+				// Each "to" task depends on ALL "from" tasks
+				for (const toId of toIds) {
+					if (!dependencies[toId]) dependencies[toId] = [];
+					for (const fromId of fromIds) {
+						if (!dependencies[toId].includes(fromId)) {
+							dependencies[toId].push(fromId);
+						}
+					}
 				}
 			}
 
-	// Extract exit criteria
+			// Format 4: "X, Y, Z depend on A" or "X depends on A, B, C"
+			// "- 22, 23, 24 depend on 21"
+			// "- 05, 06 depend on 02, 03, 04"
+			// "- 08 also depends on 05, 06"  ("also" is ignored)
+			// Strip optional "also" before matching
+			const cleanedLine = line.replace(/\balso\b/i, "");
+			const dependOnMatch = cleanedLine.match(
+				/^(?:\s*[-*]\s+)?((?:0?\d+[a-z]?\s*,\s*)*0?\d+[a-z]?)\s+depend(?:s)?\s+on\s+((?:0?\d+[a-z]?\s*,\s*)*0?\d+[a-z]?)(?:\s+\(([^)]+)\))?$/i,
+			);
+			if (dependOnMatch) {
+				const [, fromIdsStr, toIdsStr] = dependOnMatch;
+				const fromIds = fromIdsStr
+					.split(",")
+					.map((t) => t.trim())
+					.filter((t) => /^\d+[a-z]?$/.test(t))
+					.map((t) => normalizeTaskId(t));
+				const toIds = toIdsStr
+					.split(",")
+					.map((t) => t.trim())
+					.filter((t) => /^\d+[a-z]?$/.test(t))
+					.map((t) => normalizeTaskId(t));
+
+				// Each "from" task depends on ALL "to" tasks
+				for (const fromId of fromIds) {
+					if (!dependencies[fromId]) dependencies[fromId] = [];
+					for (const toId of toIds) {
+						if (!dependencies[fromId].includes(toId)) {
+							dependencies[fromId].push(toId);
+						}
+					}
+				}
+			}
+		}
+	}
+
+	// Save final phase if we were in one
+	if (currentPhase !== null) {
+		const phaseTaskIds = tasks
+			.filter((t) => t.phase === currentPhase)
+			.map((t) => t.id);
+		if (phaseTaskIds.length > 0) {
+			phases.push({
+				number: currentPhase,
+				title: currentPhaseTitle,
+				taskIds: phaseTaskIds,
+			});
+		}
+	}
+
+	// Add implicit phase-boundary dependencies
+	// First task of each phase (except phase 1) depends on last task of previous phase
+	if (phases.length > 1) {
+		for (let i = 1; i < phases.length; i++) {
+			const prevPhase = phases[i - 1];
+			const currPhase = phases[i];
+			if (prevPhase.taskIds.length === 0 || currPhase.taskIds.length === 0)
+				continue;
+
+			const lastTaskOfPrevPhase =
+				prevPhase.taskIds[prevPhase.taskIds.length - 1];
+			const firstTaskOfCurrPhase = currPhase.taskIds[0];
+
+			// Add dependency if not already present
+			if (!dependencies[firstTaskOfCurrPhase]) {
+				dependencies[firstTaskOfCurrPhase] = [];
+			}
+			if (!dependencies[firstTaskOfCurrPhase].includes(lastTaskOfPrevPhase)) {
+				dependencies[firstTaskOfCurrPhase].push(lastTaskOfPrevPhase);
+			}
+		}
+	}
+
+	// Extract exit criteria — detect both ## Exit Criteria and plain Exit criteria
 	const exitCriteria: string[] = [];
-	const exitIdx = lines.findIndex((l) => /^##\s+Exit\s+Criteria/i.test(l));
+	const exitCriteriaRe = /^(?:##\s+)?Exit\s+Criteria/i;
+	const exitIdx = lines.findIndex((l) => exitCriteriaRe.test(l));
 	if (exitIdx >= 0) {
 		for (let i = exitIdx + 1; i < lines.length; i++) {
-			if (/^##\s/.test(lines[i])) break;
+			// Stop at any new section heading (##-style or plain)
+			if (/^##\s/.test(lines[i]) || isPlainSectionHeader(lines[i])) break;
 			const m = lines[i].match(/^-\s+(.+)$/);
 			if (m) exitCriteria.push(m[1].trim());
 		}
@@ -158,9 +399,21 @@ function parseFioFormat(
 		}
 	}
 
+	// Apply parallelGroup to tasks
+	for (const group of parallelGroups) {
+		for (const taskId of group.taskIds) {
+			const task = tasks.find((t) => t.id === taskId);
+			if (task) {
+				task.parallelGroup = group.index;
+			}
+		}
+	}
+
 	return {
 		tasks,
 		dependencies,
+		parallelGroups: parallelGroups.length > 0 ? parallelGroups : undefined,
+		phases: phases.length > 0 ? phases : undefined,
 		sourcePath,
 		sourceDir,
 		exitCriteria,
@@ -204,16 +457,7 @@ function parseYaml(
 	sourcePath: string,
 	sourceDir: string,
 ): Project {
-	// Lazy-load yaml (may not be installed)
-	let YAML: typeof import("yaml");
-	try {
-		YAML = require("yaml");
-	} catch {
-		throw new Error(
-			"YAML parsing requires the 'yaml' package. Run: npm install yaml",
-		);
-	}
-
+	const YAML = loadYaml();
 	const doc = YAML.parse(content);
 	const tasks: Task[] = [];
 
@@ -257,35 +501,119 @@ export function readTaskSpec(taskDir: string, taskFile: string): string {
 // ─── Task File Updater ───────────────────────────────────────────────────────
 
 /**
- * Update task status in the source markdown file
+ * Update task status in the source file (markdown or YAML).
+ *
+ * Handles three formats:
+ * 1. Fio numbered format: `- [ ] 01 – Title` — matches by task number in the file
+ * 2. Simple checkbox: `- [ ] Title` — matches by checkbox position (index)
+ * 3. YAML: uses `yaml` library to parse, update, and stringify
  */
 export function updateTaskInFile(
 	filePath: string,
 	taskId: string,
 	status: Task["status"],
 ): void {
-	let content = fs.readFileSync(filePath, "utf-8");
-	const char = statusToChar(status);
+	const ext = path.extname(filePath).toLowerCase();
 
-	// Try Fio numbered format first
-	const fioPattern = new RegExp(
-		`(^-\\s+\\[)(.)(\\]\\s+${escapeRegex(taskId)}\\s*[—–-])`,
-		"m",
-	);
-	if (fioPattern.test(content)) {
-		content = content.replace(fioPattern, `$1${char}$3`);
-		fs.writeFileSync(filePath, content, "utf-8");
+	// Handle YAML format
+	if (ext === ".yaml" || ext === ".yml") {
+		updateTaskInYaml(filePath, taskId, status);
 		return;
 	}
 
-	// Try simple checkbox format
-	const simplePattern = new RegExp(
-		`(-\\s+\\[)(.)(\\]\\s+${escapeRegex(taskId)})`,
+	let content = fs.readFileSync(filePath, "utf-8");
+	const char = statusToChar(status);
+
+	// Strategy 1: Fio numbered format — match by explicit task ID in the file.
+	// For pure-digit IDs, also try the parsed numeric form (parity with the
+	// pre-lettered behavior). Lettered IDs ("02b", "02c") only have one valid
+	// form — the parseInt fallback would silently drop the letter suffix and
+	// create false-positive partial matches, so we skip it for them.
+	const idPatterns = new Set([escapeRegex(taskId)]);
+	if (!taskId.startsWith("0") && /^\d+$/.test(taskId)) {
+		const rawId = parseInt(taskId, 10).toString();
+		idPatterns.add(escapeRegex(rawId));
+	}
+
+	for (const idPattern of idPatterns) {
+		const fioRegex = new RegExp(
+			`(^-\\s+\\[)(.)(\\]\\s+${idPattern}\\s*[—–:-])`,
 			"m",
 		);
-	if (simplePattern.test(content)) {
-		content = content.replace(simplePattern, `$1${char}$3`);
+		const match = content.match(fioRegex);
+		if (match) {
+			content = content.replace(fioRegex, `$1${char}$3`);
 			fs.writeFileSync(filePath, content, "utf-8");
+			return;
+		}
+	}
+
+	// Strategy 2: Simple checkbox by position (task IDs are zero-padded indices)
+	const targetIndex = parseInt(taskId, 10);
+	if (!isNaN(targetIndex)) {
+		const lines = content.split("\n");
+		let checkboxIdx = 0;
+		for (let i = 0; i < lines.length; i++) {
+			const m = lines[i].match(/^(\s*-+\s+\[)(.)(\].*)$/);
+			if (m) {
+				if (checkboxIdx === targetIndex) {
+					lines[i] = m[1] + char + m[3];
+					fs.writeFileSync(filePath, lines.join("\n"), "utf-8");
+					return;
+				}
+				checkboxIdx++;
+			}
+		}
+	}
+}
+
+/**
+ * Update task status in a YAML task file using the yaml library's
+ * Document API, which preserves comments and formatting.
+ *
+ * Matches by explicit `id` field first, then falls back to
+ * position-based matching (for files without explicit IDs).
+ */
+function updateTaskInYaml(
+	filePath: string,
+	taskId: string,
+	status: Task["status"],
+): void {
+	const YAML = loadYaml();
+	const content = fs.readFileSync(filePath, "utf-8");
+	const doc = YAML.parseDocument(content);
+	const tasks = doc.get("tasks");
+	if (!tasks || !YAML.isSeq(tasks)) return;
+
+	// Build alternate ID forms for matching. For lettered IDs ("02b"), the
+	// verbatim form is the only valid pattern — parseInt would drop the suffix.
+	const idVariants: string[] = [taskId];
+	if (/^\d+$/.test(taskId)) {
+		idVariants.push(parseInt(taskId, 10).toString());
+	}
+
+	// Strategy 1: Match by explicit id field
+	for (const item of tasks.items) {
+		if (!YAML.isMap(item)) continue;
+		const idVal = item.get("id");
+		if (idVal === undefined || idVal === null) continue;
+		const idStr = String(idVal);
+		if (idVariants.includes(idStr)) {
+			item.set("status", status);
+			fs.writeFileSync(filePath, String(doc), "utf-8");
+			return;
+		}
+	}
+
+	// Strategy 2: Fall back to position-based matching
+	// (for YAML files without explicit id fields)
+	const targetIndex = parseInt(taskId, 10);
+	if (!isNaN(targetIndex) && targetIndex < tasks.items.length) {
+		const item = tasks.items[targetIndex];
+		if (YAML.isMap(item)) {
+			item.set("status", status);
+			fs.writeFileSync(filePath, String(doc), "utf-8");
+		}
 	}
 }
 
@@ -386,6 +714,28 @@ function parseTimeoutFromMeta(
 	return undefined;
 }
 
+/**
+ * Normalize a task ID: zero-pad the digit portion to 2 chars, preserve any
+ * single lowercase letter suffix. Idempotent on already-normalized IDs.
+ *
+ *   "1"   → "01"
+ *   "2"   → "02"
+ *   "2b"  → "02b"
+ *   "02b" → "02b"
+ *   "10"  → "10"
+ *   "10b" → "10b"
+ *
+ * Pass-through for IDs that don't match the expected shape (defensive — the
+ * upstream regexes restrict matches, but a stray value should not be silently
+ * re-shaped).
+ */
+function normalizeTaskId(id: string): string {
+	const match = id.match(/^(\d+)([a-z])?$/);
+	if (!match) return id;
+	const [, digits, letter] = match;
+	return digits.padStart(2, "0") + (letter ?? "");
+}
+
 function charToStatus(char: string): Task["status"] {
 	switch (char) {
 		case " ":

src/progress.ts

@@ -1,6 +1,12 @@
 import * as fs from "node:fs";
 import * as path from "node:path";
-import type { ProgressState, PRDProgress, Task, Reflection, ToolUsage } from "./types";
+import type {
+	ProgressState,
+	PRDProgress,
+	Task,
+	Reflection,
+	ToolUsage,
+} from "./types";
 import { ensureDir } from "./utils";
 
 /**
@@ -9,12 +15,15 @@ import { ensureDir } from "./utils";
  */
 export function derivePRDKey(projectDir: string, sourcePath: string): string {
 	const rel = path.relative(projectDir, sourcePath);
-	return rel.replace(/[^a-zA-Z0-9_-]/g, "-").replace(/-+/g, "-").replace(/^-|-$/g, "");
+	return rel
+		.replace(/[^a-zA-Z0-9_-]/g, "-")
+		.replace(/-+/g, "-")
+		.replace(/^-|-$/g, "");
 }
 
 /**
  * Manages persistent progress state for a ralph execution.
- * State is stored as JSON in .ralph/progress.json.
+ * State is stored as JSON in .ralpi/progress.json.
  * Supports multiple PRDs in progress simultaneously via the `prds` field.
  * Falls back to legacy flat format for backward compatibility.
  */
@@ -24,7 +33,7 @@ export class ProgressTracker {
 	private prdKey: string;
 
 	constructor(projectDir: string, sourcePath: string, prdKey?: string) {
-		const stateDir = path.join(projectDir, ".ralph");
+		const stateDir = path.join(projectDir, ".ralpi");
 		ensureDir(stateDir);
 		this.statePath = path.join(stateDir, "progress.json");
 		this.prdKey = prdKey ?? derivePRDKey(projectDir, sourcePath);
@@ -66,7 +75,10 @@ export class ProgressTracker {
 				}
 
 				// Legacy flat state exists but for a different source — promote it to PRD mode
-				const legacyKey = derivePRDKey(path.dirname(this.statePath), parsed.sourcePath);
+				const legacyKey = derivePRDKey(
+					path.dirname(this.statePath),
+					parsed.sourcePath,
+				);
 				parsed.prds = {
 					[legacyKey]: {
 						sourcePath: parsed.sourcePath,
@@ -159,7 +171,6 @@ export class ProgressTracker {
 		durationMs: number,
 		reflection?: Reflection,
 		toolUsage?: ToolUsage,
-		sessionFile?: string,
 		outputPreview?: string,
 		commitMessages?: string[],
 		commitSummary?: string,
@@ -171,7 +182,6 @@ export class ProgressTracker {
 		prd.tasks[taskId].durationMs = durationMs;
 		if (reflection) prd.tasks[taskId].reflection = reflection;
 		if (toolUsage) prd.tasks[taskId].toolUsage = toolUsage;
-		if (sessionFile) prd.tasks[taskId].sessionFile = sessionFile;
 		if (outputPreview) prd.tasks[taskId].outputPreview = outputPreview;
 		if (commitMessages) prd.tasks[taskId].commitMessages = commitMessages;
 		if (commitSummary) prd.tasks[taskId].commitSummary = commitSummary;
@@ -201,6 +211,14 @@ export class ProgressTracker {
 			.map(([id]) => id);
 	}
 
+	/** Get IDs of all failed tasks */
+	getFailedTaskIds(): string[] {
+		const prd = this.getPRD();
+		return Object.entries(prd.tasks)
+			.filter(([, info]) => info.status === "failed")
+			.map(([id]) => id);
+	}
+
 	/** Get all reflections from completed tasks */
 	getAllReflections(): Reflection[] {
 		const prd = this.getPRD();

src/types.ts

@@ -27,6 +27,26 @@ export interface Task {
 	timeoutMs?: number;
 	/** Original index in task list for deterministic ordering */
 	index?: number;
+	/** Phase number this task belongs to (1-indexed, from ## Phase N headings) */
+	phase?: number;
+}
+
+export interface ParallelGroup {
+	/** Group index (0-based, determines execution order) */
+	index: number;
+	/** Human-readable label for the group (e.g. "Play Store prep") */
+	label?: string;
+	/** Task IDs in this group — all can run concurrently */
+	taskIds: string[];
+}
+
+export interface Phase {
+	/** Phase number (1-indexed, matches the heading number) */
+	number: number;
+	/** Phase title (e.g. "Push-to-Talk MVP") */
+	title: string;
+	/** Task IDs in this phase, in order */
+	taskIds: string[];
 }
 
 export interface Project {
@@ -36,6 +56,10 @@ export interface Project {
 	tasks: Task[];
 	/** Explicit dependency map: taskId → [dependency taskIds] */
 	dependencies: Record<string, string[]>;
+	/** Explicit parallel groups from "can be done in parallel" declarations */
+	parallelGroups?: ParallelGroup[];
+	/** Phased sections from ## Phase N headings (in order) */
+	phases?: Phase[];
 	/** Exit criteria (from README ## Exit Criteria section) */
 	exitCriteria?: string[];
 	/** Path to the source task file */
@@ -97,8 +121,6 @@ export interface TaskProgressInfo {
 	error?: string;
 	/** Tool usage counts from parsed subprocess output */
 	toolUsage?: ToolUsage;
-	/** Path to session output file */
-	sessionFile?: string;
 	/** Truncated output preview for expanded view */
 	outputPreview?: string;
 	/** Git commit messages from task execution */
@@ -137,9 +159,9 @@ export interface PRDProgress {
 
 // ─── Configuration ────────────────────────────────────────────────────────────
 
-export interface RalphConfig {
+export interface RalpiConfig {
 	paths: {
-		/** Directory for ralph state files */
+		/** Directory for ralpi state files */
 		stateDir: string;
 		/** Directory for per-task reflections */
 		reflectionsDir: string;
@@ -153,6 +175,8 @@ export interface RalphConfig {
 		timeoutMs: number;
 		/** Maximum parallel tasks (0 = unlimited) */
 		maxParallel: number;
+		/** Round-robin model list for parallel tasks (empty = inherit parent model) */
+		models: string[];
 	};
 	prompts: {
 		/** Additional context injected into every task prompt */
@@ -160,18 +184,23 @@ export interface RalphConfig {
 		/** Custom prompt suffix for reflection extraction */
 		reflectionPrompt: string;
 	};
+	/** Parent session model to inherit in child agent sessions */
+	model?: unknown;
+	/** Parent session thinking level to inherit in child agent sessions */
+	thinkingLevel?: unknown;
 }
 
-export const DEFAULT_CONFIG: RalphConfig = {
+export const DEFAULT_CONFIG: RalpiConfig = {
 	paths: {
-		stateDir: ".ralph",
-		reflectionsDir: ".ralph/reflections",
+		stateDir: ".ralpi",
+		reflectionsDir: ".ralpi/reflections",
 	},
 	execution: {
-		maxRetries: 3,
-		retryDelayMs: 5000,
-		timeoutMs: 30 * 60 * 1000, // 30 minutes
+		maxRetries: 0,
+		retryDelayMs: 0,
+		timeoutMs: 0, // 0 = inherit Pi's own defaults (no ralpi-level timeout)
 		maxParallel: 3,
+		models: [],
 	},
 	prompts: {
 		projectContext: "",

src/utils.ts

@@ -1,7 +1,7 @@
 import * as fs from "node:fs";
 import * as path from "node:path";
 import type {
-	RalphConfig,
+	RalpiConfig,
 	PRDProgress,
 	ProgressState,
 	ToolUsage,
@@ -34,12 +34,84 @@ export function writeFileSafe(filePath: string, content: string): void {
 	fs.writeFileSync(filePath, content, "utf-8");
 }
 
+// ─── Loop-Active State ──────────────────────────────────────────────────────
+
+/**
+ * State persisted to disk when a ralpi execution loop is active.
+ * Used to re-instantiate widgets after a session reload.
+ */
+export interface LoopActiveState {
+	taskFile: string;
+	mode: "parallel" | "sequential";
+	startedAt: string;
+	taskIds: string[];
+	prdKey: string;
+}
+
+/**
+ * Path (relative to projectDir) where the loop-active marker is stored.
+ */
+const LOOP_ACTIVE_FILE = ".ralpi/loop-active.json";
+
+/**
+ * Write the loop-active marker, indicating an execution loop is running.
+ */
+export function writeLoopActive(
+	projectDir: string,
+	state: LoopActiveState,
+): void {
+	writeFileSafe(
+		path.join(projectDir, LOOP_ACTIVE_FILE),
+		JSON.stringify(state, null, 2),
+	);
+}
+
+/**
+ * Read the loop-active marker, if present.
+ */
+export function readLoopActive(projectDir: string): LoopActiveState | null {
+	const filePath = path.join(projectDir, LOOP_ACTIVE_FILE);
+	try {
+		const raw = fs.readFileSync(filePath, "utf-8");
+		return JSON.parse(raw) as LoopActiveState;
+	} catch {
+		return null;
+	}
+}
+
+/**
+ * Delete the loop-active marker.
+ */
+export function deleteLoopActive(projectDir: string): void {
+	const filePath = path.join(projectDir, LOOP_ACTIVE_FILE);
+	try {
+		fs.unlinkSync(filePath);
+	} catch {
+		// Ignore if already gone
+	}
+}
+
+/**
+ * Discover the project directory by walking up to find `.ralpi/`.
+ */
+export function findRalpiDir(startDir: string): string | null {
+	let current = path.resolve(startDir);
+	const root = path.parse(current).root;
+	while (current !== root) {
+		if (fs.existsSync(path.join(current, ".ralpi"))) {
+			return current;
+		}
+		current = path.dirname(current);
+	}
+	return null;
+}
+
 // ─── Async Agent Session ────────────────────────────────────────────────────
 
 // ─── Progress Discovery ─────────────────────────────────────────────────────
 
 /**
- * Find the nearest .ralph/progress.json by walking up from the given directory.
+ * Find the nearest .ralpi/progress.json by walking up from the given directory.
  * For a specific sourcePath, finds the matching PRD entry.
  */
 export function findProgressFile(
@@ -50,7 +122,7 @@ export function findProgressFile(
 	const root = path.parse(current).root;
 
 	while (current !== root) {
-		const candidate = path.join(current, ".ralph", "progress.json");
+		const candidate = path.join(current, ".ralpi", "progress.json");
 		if (fs.existsSync(candidate)) {
 			try {
 				const raw = fs.readFileSync(candidate, "utf-8");
@@ -82,40 +154,43 @@ export function findProgressFile(
 
 // ─── Config ──────────────────────────────────────────────────────────────────
 
-function parseSimpleYaml(content: string): Record<string, any> {
+/** Try to use the `yaml` package (real dependency in package.json).
+ *  Falls back to a flat key:value parser when unavailable. */
+const parseSimpleYaml: (content: string) => Record<string, any> = (() => {
+	try {
+		// eslint-disable-next-line @typescript-eslint/no-var-requires
+		const { parse } = require("yaml");
+		return (content: string) => parse(content) ?? {};
+	} catch {
+		return (content: string) => {
 			const result: Record<string, any> = {};
-	const lines = content.split("\n");
-
-	for (const line of lines) {
+			for (const line of content.split("\n")) {
 				const trimmed = line.trim();
 				if (!trimmed || trimmed.startsWith("#")) continue;
-
-		const match = trimmed.match(/^([^:]+):\s*(.+)$/);
+				const match = trimmed.match(/^([^:]+):\s*(.*)$/);
 				if (match) {
-			const key = match[1].trim();
-			let value: string | boolean | number = match[2].trim();
-
-			// Parse booleans
-			if (value === "true") value = true;
-			else if (value === "false") value = false;
-			// Parse numbers
-			else if (/^\d+$/.test(value)) value = parseInt(value, 10);
-			else if (/^\d+\.\d+$/.test(value)) value = parseFloat(value);
-
-			result[key] = value;
+					const value = match[2].trim();
+					if (value === "true") result[match[1].trim()] = true;
+					else if (value === "false") result[match[1].trim()] = false;
+					else if (/^\d+$/.test(value))
+						result[match[1].trim()] = parseInt(value, 10);
+					else if (/^\d+\.\d+$/.test(value))
+						result[match[1].trim()] = parseFloat(value);
+					else result[match[1].trim()] = value;
 				}
 			}
-
 			return result;
-}
+		};
+	}
+})();
 
 /**
  * Deep merge configuration objects
  */
 function mergeConfig(
-	defaults: RalphConfig,
+	defaults: RalpiConfig,
 	overrides: Record<string, any>,
-): RalphConfig {
+): RalpiConfig {
 	const result = { ...defaults };
 
 	for (const [key, value] of Object.entries(overrides)) {
@@ -126,28 +201,47 @@ function mergeConfig(
 		}
 	}
 
-	return result as RalphConfig;
+	return result as RalpiConfig;
 }
 
+/** Path to the global ralpi config under the user's Pi home directory. */
+const GLOBAL_CONFIG_PATH = path.join(
+	process.env.HOME || "/tmp",
+	".pi",
+	"ralpi",
+	"config.yaml",
+);
+
 /**
- * Load configuration from .ralph/config.yaml or return defaults
+ * Load and merge config from global and project sources.
+ *
+ * Precedence (highest wins):
+ *   1. Project-level: `<projectDir>/.ralpi/config.yaml`
+ *   2. Global: `~/.pi/ralpi/config.yaml`
+ *   3. `DEFAULT_CONFIG` in `src/types.ts`
  */
-export function loadConfig(projectDir: string): RalphConfig {
-	const configPath = path.join(projectDir, ".ralph", "config.yaml");
+export function loadConfig(projectDir: string): RalpiConfig {
+	// Start with defaults
+	const merged: RalpiConfig = { ...DEFAULT_CONFIG };
 
-	// Return defaults silently when config file does not exist
-	if (!fs.existsSync(configPath)) {
-		return { ...DEFAULT_CONFIG };
-	}
+	// Layer 1: global config (~/.pi/ralpi/config.yaml)
+	tryLoadConfigFile(GLOBAL_CONFIG_PATH, merged);
 
+	// Layer 2: project config (.ralpi/config.yaml) — overrides global
+	tryLoadConfigFile(path.join(projectDir, ".ralpi", "config.yaml"), merged);
+
+	return merged;
+
+	/** Attempt to load a single config file and merge into `acc` in place. */
+	function tryLoadConfigFile(filePath: string, acc: RalpiConfig): void {
+		if (!fs.existsSync(filePath)) return;
 		try {
-		const content = fs.readFileSync(configPath, "utf-8");
-		// Simple YAML parsing (key: value format)
-		const config = parseSimpleYaml(content);
-		return mergeConfig(DEFAULT_CONFIG, config);
+			const content = fs.readFileSync(filePath, "utf-8");
+			const parsed = parseSimpleYaml(content);
+			Object.assign(acc, mergeConfig(acc, parsed));
 		} catch {
-		// Malformed config — fall back to defaults silently
-		return { ...DEFAULT_CONFIG };
+			// Malformed config — skip silently
+		}
 	}
 }
 
@@ -338,6 +432,8 @@ export async function runAgentSession(
 	timeoutMs: number,
 	onEvent?: (event: AgentSessionEvent) => void,
 	signal?: AbortSignal,
+	model?: unknown,
+	thinkingLevel?: unknown,
 ): Promise<{
 	success: boolean;
 	text: string;
@@ -353,12 +449,13 @@ export async function runAgentSession(
 		bash: 0,
 		other: 0,
 	};
-	const recordedEvents: AgentSessionEvent[] = [];
-
-	// Wire timeout via abort signal
-	const timeoutHandle = setTimeout(() => {
+	// Wire timeout via abort signal (only when set; 0 means inherit Pi's defaults)
+	let timeoutHandle: NodeJS.Timeout | null = null;
+	if (timeoutMs > 0) {
+		timeoutHandle = setTimeout(() => {
 			if (sessionRef?.session) sessionRef.session.agent.abort();
 		}, timeoutMs);
+	}
 
 	const sessionRef: {
 		session?: Awaited<ReturnType<typeof createAgentSession>>["session"];
@@ -381,6 +478,8 @@ export async function runAgentSession(
 			sessionManager: SessionManager.inMemory(),
 			resourceLoader: loader,
 			tools: ["read", "bash", "edit", "write", "grep", "find", "ls"],
+			model: model as any,
+			thinkingLevel: thinkingLevel as any,
 		});
 		sessionRef.session = result.session;
 
@@ -393,7 +492,6 @@ export async function runAgentSession(
 		let stopReason: string | undefined;
 
 		const unsubscribe = result.session.subscribe((event) => {
-			recordedEvents.push(event);
 			onEvent?.(event);
 
 			if (event.type === "message_end") {
@@ -428,7 +526,7 @@ export async function runAgentSession(
 		unsubscribe();
 		result.session.dispose();
 		signal?.removeEventListener("abort", abortHandler);
-		clearTimeout(timeoutHandle);
+		if (timeoutHandle) clearTimeout(timeoutHandle);
 
 		if (errorMessage && !finalText) {
 			return {
@@ -437,7 +535,7 @@ export async function runAgentSession(
 				error: errorMessage,
 				toolUsage,
 				stopReason,
-				events: recordedEvents,
+				events: [], // streamed to file
 			};
 		}
 
@@ -446,16 +544,16 @@ export async function runAgentSession(
 			text: finalText.trim(),
 			toolUsage,
 			stopReason,
-			events: recordedEvents,
+			events: [],
 		};
 	} catch (error) {
-		clearTimeout(timeoutHandle);
+		if (timeoutHandle) clearTimeout(timeoutHandle);
 		return {
 			success: false,
 			text: "",
 			error: error instanceof Error ? error.message : String(error),
 			toolUsage,
-			events: recordedEvents,
+			events: [],
 		};
 	} finally {
 		sessionRef.session?.dispose();
@@ -481,6 +579,53 @@ function extractAssistantText(content: unknown): string {
 
 // ─── Git Commit Capture ──────────────────────────────────────────────────────
 
+/**
+ * Check if there are any uncommitted changes in the git repository.
+ */
+export function hasUncommittedChanges(projectDir: string): boolean {
+	const { execSync } = require("node:child_process");
+	try {
+		const output = execSync("git status --porcelain", {
+			cwd: projectDir,
+			encoding: "utf-8",
+		}).trim();
+		return output.length > 0;
+	} catch {
+		return false;
+	}
+}
+
+/**
+ * Get the current git status in porcelain format.
+ * Includes untracked files, which `git diff` alone would miss.
+ */
+export function getGitStatusPorcelain(projectDir: string): string {
+	const { execSync } = require("node:child_process");
+	try {
+		return execSync("git status --porcelain", {
+			cwd: projectDir,
+			encoding: "utf-8",
+		}).trim();
+	} catch {
+		return "";
+	}
+}
+
+/**
+ * Get the current git diff for tracked uncommitted changes.
+ */
+export function getGitDiff(projectDir: string): string {
+	const { execSync } = require("node:child_process");
+	try {
+		return execSync("git diff", {
+			cwd: projectDir,
+			encoding: "utf-8",
+		}).trim();
+	} catch {
+		return "";
+	}
+}
+
 /**
  * Capture recent git commits made during task execution
  * Returns commit messages and a summary string

src/widget-batcher.ts

@@ -0,0 +1,92 @@
+import type { ExtensionContext } from "@earendil-works/pi-coding-agent";
+
+/**
+ * Batches widget updates from multiple parallel tasks into a single
+ * render cycle, preventing TUI thrashing when agents update independently.
+ *
+ * Uses microtask debouncing: updates within the same event-loop tick
+ * are coalesced into one flush. No artificial interval — updates hit the
+ * screen as soon as the current tick yields, but never duplicatively.
+ */
+export class WidgetBatcher {
+	/** Pending widget updates keyed by widget key. */
+	private pending: Map<string, string[]> = new Map();
+
+	/** Widget keys scheduled for removal. */
+	private pendingRemovals: Set<string> = new Set();
+
+	/** Whether a microtask flush is already queued. */
+	private scheduled = false;
+
+	/** Whether a flush is currently executing (prevents re-entry). */
+	private flushing = false;
+
+	constructor(private ctx: ExtensionContext) {}
+
+	/**
+	 * Schedule a widget update. Flushed asynchronously at end of the
+	 * current event-loop tick; multiple calls in the same tick coalesce.
+	 */
+	schedule(key: string, lines: string[]): void {
+		this.pending.set(key, lines);
+		this.scheduleFlush();
+	}
+
+	/**
+	 * Remove a widget (e.g., when a task completes).
+	 * Flushed asynchronously at end of the current tick.
+	 */
+	scheduleRemove(key: string): void {
+		this.pending.delete(key);
+		this.pendingRemovals.add(key);
+		this.scheduleFlush();
+	}
+
+	/** Synchronously flush all pending updates. */
+	flush(): void {
+		this.doFlush();
+	}
+
+	/** Flush remaining updates then stop scheduling. */
+	stop(): void {
+		this.doFlush();
+	}
+
+	// ── Internal ────────────────────────────────────────────────────────
+
+	private scheduleFlush(): void {
+		if (this.scheduled) return;
+		this.scheduled = true;
+		queueMicrotask(() => {
+			this.scheduled = false;
+			this.doFlush();
+		});
+	}
+
+	private doFlush(): void {
+		if (this.flushing) return;
+		this.flushing = true;
+
+		// Atomically swap — new schedule()/scheduleRemove() calls land on fresh
+		// collections, so the batch we iterate stays immutable and nothing is lost.
+		const toRender = this.pending;
+		const toRemove = this.pendingRemovals;
+		this.pending = new Map();
+		this.pendingRemovals = new Set();
+
+		// Apply removals first
+		for (const key of toRemove) {
+			this.ctx.ui.setWidget(key, undefined);
+		}
+
+		// Sort by key for deterministic, stable ordering across every flush.
+		// Task IDs are zero-padded ("008", "012", "013") so alpha sort = numeric order.
+		const sortedKeys = Array.from(toRender.keys()).sort();
+		for (const key of sortedKeys) {
+			// eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+			this.ctx.ui.setWidget(key, toRender.get(key)!);
+		}
+
+		this.flushing = false;
+	}
+}

tasks/ralph-loop-fixes/01-fix-loadconfig-graceful-default.md

@@ -1,38 +0,0 @@
-# 01. Fix `loadConfig` to return defaults gracefully when `.ralph/config.yaml` is missing
-
-meta:
-  id: ralph-loop-fixes-01
-  feature: ralph-loop-fixes
-  priority: P1
-  depends_on: []
-  tags: [implementation, utils]
-
-objective:
-- `loadConfig()` should return `DEFAULT_CONFIG` silently when `.ralph/config.yaml` does not exist, without logging a warning to stderr
-
-deliverables:
-- Modified `src/utils.ts` — `loadConfig()` function
-
-steps:
-- Open `src/utils.ts` and locate `loadConfig()`
-- Add `fs.existsSync()` check before `fs.readFileSync()`
-- If config file does not exist, return a deep copy of `DEFAULT_CONFIG` without any console output
-- If config file exists but is malformed, fall back to defaults silently
-- Remove or suppress the `console.warn()` call
-
-tests:
-- Manual: Run `/ralph resume` in a project directory with no `.ralph/` directory — should not print warning
-- Manual: Run `/ralph run` in a project with `.ralph/progress.json` but no `config.yaml` — should proceed with defaults
-
-acceptance_criteria:
-- No console warning when config.yaml is missing
-- `loadConfig()` returns a valid `RalphConfig` object in all cases
-- Existing behavior with valid config.yaml is unchanged
-
-validation:
-- Check `src/utils.ts` loadConfig function returns silently on missing file
-- Verify no `console.warn` or `console.error` in the missing-config path
-
-notes:
-- Current code at line ~145 in utils.ts: `fs.readFileSync(configPath, "utf-8")` throws ENOENT
-- The try-catch does catch it but still logs the warning — the warning is noisy for normal usage where config is optional

tasks/ralph-loop-fixes/02-fix-spawnpi-print-mode.md

@@ -1,42 +0,0 @@
-# 02. Replace `spawnPi` with `--print` mode and stdin piping
-
-meta:
-  id: ralph-loop-fixes-02
-  feature: ralph-loop-fixes
-  priority: P1
-  depends_on: []
-  tags: [implementation, utils]
-
-objective:
-- Replace `spawnPi()` so it invokes `pi --print` with prompt content piped via stdin, instead of using non-existent `--no-stream` and `--prompt` flags
-
-deliverables:
-- Modified `src/utils.ts` — `spawnPi()` function
-- Updated `src/executor.ts` — import and call site for `spawnPi`
-
-steps:
-- Open `src/utils.ts` and locate `spawnPi()`
-- Replace `spawnSync` args from `["--no-stream", "--prompt", promptFile, ...]` to `["--print"]`
-- Read the prompt file content and pass it as `input` to `spawnSync`
-- The `input` option accepts a string that is piped to the child process stdin
-- Keep `encoding`, `timeout`, and `maxBuffer` options as-is
-- Update the function signature if needed (no longer needs `promptFile` path, can take prompt content directly, or read it internally)
-
-tests:
-- Manual: Spawn pi with a simple prompt — verify it returns text output and exits cleanly
-- Manual: Verify `result.stdout` contains the pi response text (not NDJSON or event stream)
-
-acceptance_criteria:
-- `spawnPi()` exits with code 0 on successful execution
-- `result.stdout` contains plain text response from pi
-- No "Unknown options: --no-stream, --prompt" error
-
-validation:
-- Run `pi --print` with piped input manually to verify behavior
-- Check spawnSync call uses `["--print"]` args and `input` option
-
-notes:
-- Pi's `--print` flag runs in non-interactive mode: reads from stdin, writes to stdout, exits
-- `spawnSync` accepts an `input` option (string) that pipes to child stdin
-- Current broken args: `["--no-stream", "--prompt", promptFile]`
-- The `extractTextFromEvent()` function can be simplified or removed since `--print` returns plain text

tasks/ralph-loop-fixes/03-replace-sendmessage-with-ctx-ui.md

@@ -1,47 +0,0 @@
-# 03. Replace `sendMessage` with `ctx.ui` progress API
-
-meta:
-  id: ralph-loop-fixes-03
-  feature: ralph-loop-fixes
-  priority: P1
-  depends_on: [ralph-loop-fixes-04]
-  tags: [implementation, executor]
-
-objective:
-- Replace all `piApi.sendMessage({ customType: "ralph-progress", display: true })` calls with `ctx.ui.notify()` and `ctx.ui.setStatus()` to avoid TUI crash from unregistered custom message renderer
-
-deliverables:
-- Modified `src/executor.ts` — remove `sendProgressMessage()`, replace with `ctx.ui` calls
-- Modified `src/executor.ts` — remove `formatToolUsage()` if no longer needed, or keep for status text
-
-steps:
-- Open `src/executor.ts`
-- Remove `sendProgressMessage()` function entirely
-- In `runTask()`, replace `sendProgressMessage(piApi, task, project, "starting")` with `ctx.ui.setStatus("ralph", "Running ${task.id}: ${task.title}")`
-- In `runTask()` success path, replace `sendProgressMessage(..., "completed")` with `ctx.ui.notify()` for completion summary
-- In `runTask()` failure path, replace `sendProgressMessage(..., "failed")` with `ctx.ui.notify()` for error
-- In `executeBatch()`, replace batch start `piApi.sendMessage()` with `ctx.ui.setStatus()`
-- In `executeTask()`, replace retry `piApi.sendMessage()` with `ctx.ui.notify()`
-- Remove `piApi: ExtensionAPI` parameter from all executor functions (replaced by `ctx: ExtensionCommandContext`)
-- Remove unused `ExtensionAPI` import from executor.ts
-
-tests:
-- Manual: Run a task and verify progress appears in the Pi UI without crash
-- Manual: Verify no `child.render is not a function` error
-
-acceptance_criteria:
-- No TUI crash during task execution
-- Progress messages visible to user via `ctx.ui`
-- `sendProgressMessage()` function removed from codebase
-- `piApi.sendMessage()` no longer called anywhere in executor
-
-validation:
-- Grep for `sendMessage` in executor.ts — should only appear in comments or not at all
-- Grep for `customType.*ralph-progress` — should be removed
-- Verify `ctx.ui.notify` and `ctx.ui.setStatus` are used instead
-
-notes:
-- `ctx.ui.notify(message, type)` shows a notification — use "info" for progress, "error" for failures
-- `ctx.ui.setStatus(key, text)` sets footer status text — good for "Running task X" updates
-- `ctx.ui.setStatus(key, undefined)` clears the status
-- The TUI crash (`child.render is not a function`) happens because `customType: "ralph-progress"` has no registered renderer via `pi.registerMessageRenderer()`

tasks/ralph-loop-fixes/04-thread-ctx-through-execute-batch.md

@@ -1,47 +0,0 @@
-# 04. Thread `ExtensionCommandContext` through `executeBatch`
-
-meta:
-  id: ralph-loop-fixes-04
-  feature: ralph-loop-fixes
-  priority: P1
-  depends_on: []
-  tags: [implementation, plumbing]
-
-objective:
-- Pass `ctx: ExtensionCommandContext` from command handlers through to all executor functions that need it, replacing the missing `piApi: ExtensionAPI` parameter
-
-deliverables:
-- Modified `index.ts` — all `executeBatch()` calls pass `ctx` as 6th parameter
-- Modified `src/executor.ts` — `executeBatch()`, `executeTask()`, `runTask()`, `executeBatchParallel()` accept `ctx: ExtensionCommandContext`
-
-steps:
-- Open `src/executor.ts`
-- Add `import type { ExtensionCommandContext } from "@earendil-works/pi-coding-agent"`
-- Update `executeBatch()` signature: add `ctx: ExtensionCommandContext` as 6th parameter (after `progress`)
-- Update `executeTask()` signature: add `ctx: ExtensionCommandContext` parameter
-- Update `runTask()` signature: add `ctx: ExtensionCommandContext` parameter
-- Update `executeBatchParallel()` signature: add `ctx: ExtensionCommandContext` parameter
-- Thread `ctx` through all internal calls (batch → task → run)
-- Open `index.ts`
-- In `handleRun()`: pass `ctx` to `executeBatch()`
-- In `handleResume()`: pass `ctx` to `executeBatch()`
-- In `handleNext()`: pass `ctx` to `executeBatch()`
-
-tests:
-- Manual: `/ralph run` should execute without "undefined is not a function" errors
-- Manual: `/ralph resume` should execute without context-related errors
-
-acceptance_criteria:
-- `executeBatch()` receives a valid `ExtensionCommandContext` in all call paths
-- No `undefined` access errors when executor calls `ctx.ui.*`
-- TypeScript compiles without errors
-
-validation:
-- Run `npx tsc --noEmit` in extension directory
-- Verify `ctx` parameter exists in all executor function signatures
-- Verify all call sites in index.ts pass `ctx`
-
-notes:
-- `ExtensionCommandContext` extends `ExtensionContext` and adds session control methods
-- Command handlers receive `ExtensionCommandContext`, not bare `ExtensionContext`
-- The `piApi` parameter was `ExtensionAPI` which has `sendMessage()` — we're replacing it with `ctx` which has `ctx.ui` for UI access

tasks/ralph-loop-fixes/05-fix-sequential-mode-labels.md

@@ -1,39 +0,0 @@
-# 05. Fix sequential mode batch labels
-
-meta:
-  id: ralph-loop-fixes-05
-  feature: ralph-loop-fixes
-  priority: P2
-  depends_on: [ralph-loop-fixes-04]
-  tags: [implementation, ui]
-
-objective:
-- Suppress "Batch N:" label for single-task batches; use numbered list format (1., 2., 3.) for sequential task execution to match original behavior
-
-deliverables:
-- Modified `src/executor.ts` — `executeBatch()` console output
-
-steps:
-- Open `src/executor.ts` and locate `executeBatch()`
-- In the batch header log, check if `tasks.length === 1`
-- If single task: log `[ralph] Running task ${task.id}: ${task.title}` (no "Batch N" wrapper)
-- If multiple tasks: keep existing `=== Batch N (M tasks) ===` format
-- Track global task counter for sequential numbered output if needed
-
-tests:
-- Manual: Run a single-task batch — verify no "Batch N" in output
-- Manual: Run a multi-task batch — verify "Batch N" still appears
-
-acceptance_criteria:
-- Single-task batches do not show "Batch N:" prefix
-- Multi-task batches still show batch header
-- Output format matches original: `[ralph] Running task 001: Title`
-
-validation:
-- Check `console.log` output in executeBatch for conditional formatting
-- Verify single-task path uses task-focused label
-
-notes:
-- Original behavior: single tasks show numbered list (1., 2., 3.), batches show "Batch N:"
-- Current code always shows `[ralph] === Batch N (M tasks) ===` regardless of batch size
-- This is cosmetic but matches user preference for compact UI

tasks/ralph-loop-fixes/06-simplify-parsertoolsusage.md

@@ -1,40 +0,0 @@
-# 06. Simplify `parseToolUsage` for plain text output
-
-meta:
-  id: ralph-loop-fixes-06
-  feature: ralph-loop-fixes
-  priority: P2
-  depends_on: [ralph-loop-fixes-02]
-  tags: [implementation, utils]
-
-objective:
-- Remove NDJSON event parsing from `parseToolUsage()` since `pi --print` returns plain text, not structured event streams
-
-deliverables:
-- Modified `src/utils.ts` — `parseToolUsage()` function
-
-steps:
-- Open `src/utils.ts` and locate `parseToolUsage()`
-- Remove the NDJSON parsing block (lines that check `line.startsWith("data: ")` and `JSON.parse`)
-- Keep only the regex fallback that counts tool mentions in plain text output
-- Remove `extractTextFromEvent()` if no longer needed (plain text from `--print` needs no extraction)
-- Update `executor.ts` to call `parseToolUsage()` directly on `result.stdout` without `extractTextFromEvent()`
-
-tests:
-- Manual: Run a task that uses multiple tools — verify tool counts are captured from plain text output
-- Manual: Verify no JSON parse errors in tool usage parsing
-
-acceptance_criteria:
-- `parseToolUsage()` works correctly on plain text output
-- No JSON parsing logic remains in `parseToolUsage()`
-- Tool counts ([read], [write], [edit], [bash]) are still extracted via regex
-
-validation:
-- Grep for `JSON.parse` in parseToolUsage — should be removed
-- Grep for `data:` prefix check — should be removed
-- Verify regex-based tool counting still present and functional
-
-notes:
-- `pi --print` returns plain text, not NDJSON event stream
-- The regex fallback patterns (`\[read\]`, `read(`, etc.) are sufficient for counting tool mentions
-- `extractTextFromEvent()` was only needed for NDJSON — can be removed or simplified to identity function

tasks/ralph-loop-fixes/README.md

@@ -1,26 +0,0 @@
-# Ralph-Loop Extension Fixes
-
-Objective: Fix critical bugs preventing `/ralph resume` from working — broken CLI flags, unthreaded context, missing config, and TUI crash.
-
-Status legend: [ ] todo, [~] in-progress, [x] done
-
-Tasks
-- [x] 01 — Fix `loadConfig` to return defaults gracefully when `.ralph/config.yaml` is missing → `01-fix-loadconfig-graceful-default.md`
-- [x] 02 — Replace `spawnPi` with `--print` mode and stdin piping → `02-fix-spawnpi-print-mode.md`
-- [x] 03 — Replace `sendMessage` with `ctx.ui` progress API → `03-replace-sendmessage-with-ctx-ui.md`
-- [x] 04 — Thread `ExtensionCommandContext` through `executeBatch` → `04-thread-ctx-through-execute-batch.md`
-- [x] 05 — Fix sequential mode batch labels → `05-fix-sequential-mode-labels.md`
-- [x] 06 — Simplify `parseToolUsage` for plain text output → `06-simplify-parsertoolsusage.md`
-
-Dependencies
-- 02 depends on nothing (standalone utils fix)
-- 03 depends on 04 (needs ctx available in executor)
-- 04 depends on nothing (standalone plumbing fix)
-- 05 depends on 04 (executor changes)
-- 06 depends on 02 (output format changes from --print)
-
-Exit criteria
-- `/ralph resume` runs without errors in a project with no `.ralph/config.yaml`
-- Pi subprocess spawns successfully with `--print` mode
-- Progress messages display via `ctx.ui` without TUI crash
-- All batch execution paths receive context parameter

tests/dag-construction.test.ts

@@ -0,0 +1,674 @@
+/// <reference types="bun-types" />
+import { describe, it, expect } from "bun:test";
+import type { Project, Task } from "../src/types";
+import {
+	buildExecutionPlan,
+	buildSequentialPlan,
+	getBlockedTasks,
+	detectCycles,
+	getCriticalPath,
+	formatDependencyChain,
+	formatExecutionPlan,
+} from "../src/dag";
+
+// ─── Helpers ─────────────────────────────────────────────────────────────────
+
+function makeProject(overrides?: Partial<Project>): Project {
+	return {
+		tasks: [],
+		dependencies: {},
+		sourcePath: "/tmp/test.md",
+		sourceDir: "/tmp",
+		...overrides,
+	};
+}
+
+function task(
+	id: string,
+	dependencies: string[] = [],
+	status: Task["status"] = "pending",
+	parallelGroup?: number,
+): Task {
+	return { id, title: `Task ${id}`, status, dependencies, parallelGroup };
+}
+
+function tasksFrom(...args: Task[]): Task[] {
+	return args;
+}
+
+// ─── Basic DAG Construction ──────────────────────────────────────────────────
+
+describe("buildExecutionPlan (Kahn's algorithm)", () => {
+	it("handles empty task list", () => {
+		const project = makeProject({ tasks: [] });
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches).toEqual([]);
+		expect(plan.totalTasks).toBe(0);
+	});
+
+	it("puts all root tasks in batch 0", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02"), task("03")),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches).toHaveLength(1);
+		expect(plan.batches[0].tasks.map((t) => t.id).sort()).toEqual([
+			"01",
+			"02",
+			"03",
+		]);
+	});
+
+	it("builds correct linear dependency chain", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+				task("04", ["03"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches).toHaveLength(4);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[1].tasks.map((t) => t.id)).toEqual(["02"]);
+		expect(plan.batches[2].tasks.map((t) => t.id)).toEqual(["03"]);
+		expect(plan.batches[3].tasks.map((t) => t.id)).toEqual(["04"]);
+	});
+
+	it("groups parallelizable tasks in the same batch", () => {
+		// Diamond: 01 -> 02, 03 -> 04
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["02", "03"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		// Batch 0: [01], Batch 1: [02, 03], Batch 2: [04]
+		expect(plan.batches).toHaveLength(3);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[1].tasks.map((t) => t.id).sort()).toEqual(["02", "03"]);
+		expect(plan.batches[2].tasks.map((t) => t.id)).toEqual(["04"]);
+	});
+
+	it("assigns correct batchIndex values", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["02", "03"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches[0].batchIndex).toBe(0);
+		expect(plan.batches[1].batchIndex).toBe(1);
+		expect(plan.batches[2].batchIndex).toBe(2);
+	});
+
+	it("skips completed tasks and includes them in skippedTasks", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01", [], "completed"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set(["01"]));
+		expect(plan.totalTasks).toBe(2);
+		expect(plan.skippedTasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches).toHaveLength(2);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["02"]);
+		expect(plan.batches[1].tasks.map((t) => t.id)).toEqual(["03"]);
+	});
+
+	it("throws on dependency cycle", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01", ["03"]),
+				task("02", ["01"]),
+				task("03", ["02"]),
+			),
+		});
+		expect(() => buildExecutionPlan(project, new Set())).toThrow(
+			/dependency cycle/i,
+		);
+	});
+
+	it("blocks tasks that depend on failed tasks", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+				task("04", ["03"]),
+			),
+		});
+		const plan = buildExecutionPlan(
+			project,
+			new Set(),
+			undefined,
+			new Set(["01"]),
+		);
+		// 01 is excluded from pending (failed). 02, 03, 04 are pending but
+		// transitively blocked — they don't appear in batches.
+		expect(plan.skippedTasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.totalTasks).toBe(3); // 02, 03, 04 are pending but blocked
+		expect(plan.batches).toHaveLength(0);
+	});
+
+	it("blocks immediate dependents when task fails", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04"), // independent
+			),
+		});
+		const plan = buildExecutionPlan(
+			project,
+			new Set(),
+			undefined,
+			new Set(["01"]),
+		);
+		// 01 is excluded from pending (failed). 02, 03 are pending but blocked
+		// (depend on 01). 04 is independent and ready.
+		expect(plan.skippedTasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["04"]);
+	});
+});
+
+// ─── Complex DAGs ───────────────────────────────────────────────────────────
+
+describe("Complex DAG batching", () => {
+	it("builds the OAuth PRD example correctly", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+				task("04", ["01"]),
+				task("05", ["03", "04"]),
+				task("06", ["03", "04"]),
+				task("07", ["03"]),
+				task("08", ["05", "06", "07"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		// Expected batches: [01], [02,04], [03], [05,06,07], [08]
+		expect(plan.batches).toHaveLength(5);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[1].tasks.map((t) => t.id).sort()).toEqual(["02", "04"]);
+		expect(plan.batches[2].tasks.map((t) => t.id)).toEqual(["03"]);
+		expect(plan.batches[3].tasks.map((t) => t.id).sort()).toEqual([
+			"05",
+			"06",
+			"07",
+		]);
+		expect(plan.batches[4].tasks.map((t) => t.id)).toEqual(["08"]);
+	});
+
+	it("builds the Design Token PRD example correctly", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["02", "03"]),
+				task("05", ["04", "01"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		// Expected batches: [01], [02,03], [04], [05]
+		expect(plan.batches).toHaveLength(4);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[1].tasks.map((t) => t.id).sort()).toEqual(["02", "03"]);
+		expect(plan.batches[2].tasks.map((t) => t.id)).toEqual(["04"]);
+		expect(plan.batches[3].tasks.map((t) => t.id)).toEqual(["05"]);
+	});
+
+	it("handles a 3-tier diamond", () => {
+		//      01
+		//     /  \
+		//    02  03
+		//   / \ / \
+		//  04 05 06
+		//   \ | /
+		//    07
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["02"]),
+				task("05", ["02", "03"]),
+				task("06", ["03"]),
+				task("07", ["04", "05", "06"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches).toHaveLength(4);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[1].tasks.map((t) => t.id).sort()).toEqual(["02", "03"]);
+		expect(plan.batches[2].tasks.map((t) => t.id).sort()).toEqual([
+			"04",
+			"05",
+			"06",
+		]);
+		expect(plan.batches[3].tasks.map((t) => t.id)).toEqual(["07"]);
+	});
+
+	it("handles a wide fan-out with delayed convergence", () => {
+		// 01 -> 02,03,04,05,06
+		// 02,03 -> 07
+		// 04,05 -> 08
+		// 06 -> 09
+		// 07,08,09 -> 10
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["01"]),
+				task("05", ["01"]),
+				task("06", ["01"]),
+				task("07", ["02", "03"]),
+				task("08", ["04", "05"]),
+				task("09", ["06"]),
+				task("10", ["07", "08", "09"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches).toHaveLength(4);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[1].tasks.map((t) => t.id).sort()).toEqual([
+			"02",
+			"03",
+			"04",
+			"05",
+			"06",
+		]);
+		expect(plan.batches[2].tasks.map((t) => t.id).sort()).toEqual([
+			"07",
+			"08",
+			"09",
+		]);
+		expect(plan.batches[3].tasks.map((t) => t.id)).toEqual(["10"]);
+	});
+
+	it("handles multiple independent subgraphs", () => {
+		// Two completely independent chains:
+		// Chain A: 01 -> 02 -> 03
+		// Chain B: 04 -> 05
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+				task("04"),
+				task("05", ["04"]),
+			),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		// Batch 0: [01, 04] (both roots)
+		// Batch 1: [02, 05]
+		// Batch 2: [03]
+		expect(plan.batches[0].tasks.map((t) => t.id).sort()).toEqual(["01", "04"]);
+		expect(plan.batches[1].tasks.map((t) => t.id).sort()).toEqual(["02", "05"]);
+		expect(plan.batches[2].tasks.map((t) => t.id)).toEqual(["03"]);
+	});
+
+	it("batches tasks respecting fan-in convergence", () => {
+		// 01 -> 03, 02 -> 03 (03 depends on both 01 AND 02)
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02"), task("03", ["01", "02"])),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches[0].tasks.map((t) => t.id).sort()).toEqual(["01", "02"]);
+		expect(plan.batches[1].tasks.map((t) => t.id)).toEqual(["03"]);
+	});
+});
+
+// ─── Sequential Plan ─────────────────────────────────────────────────────────
+
+describe("buildSequentialPlan", () => {
+	it("puts each task in its own batch", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02", ["01"]), task("03", ["01"])),
+		});
+		const plan = buildSequentialPlan(project, new Set());
+		expect(plan.batches).toHaveLength(3);
+		plan.batches.forEach((b, i) => {
+			expect(b.tasks).toHaveLength(1);
+			expect(b.batchIndex).toBe(i);
+		});
+	});
+
+	it("skips completed tasks and blocks transitively failed tasks", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+				task("04"),
+			),
+		});
+		const plan = buildSequentialPlan(project, new Set(["01"]), new Set(["01"]));
+		// 01 failed => 02, 03 blocked. 04 independent, runs.
+		expect(plan.skippedTasks.map((t) => t.id).sort()).toEqual([
+			"01",
+			"02",
+			"03",
+		]);
+		expect(plan.totalTasks).toBe(3);
+	});
+
+	it("maintains task order in sequential batches", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02", ["01"]), task("03", ["01"])),
+		});
+		const plan = buildSequentialPlan(project, new Set());
+		expect(plan.batches.map((b) => b.tasks[0].id)).toEqual(["01", "02", "03"]);
+	});
+});
+
+// ─── getBlockedTasks ─────────────────────────────────────────────────────────
+
+describe("getBlockedTasks", () => {
+	it("returns direct dependents of failed tasks", () => {
+		const pending = tasksFrom(task("01"), task("02", ["01"]), task("03"));
+		const blocked = getBlockedTasks(pending, new Set(["01"]));
+		expect([...blocked]).toEqual(["02"]);
+	});
+
+	it("returns transitive dependents (chain reaction)", () => {
+		const pending = tasksFrom(
+			task("01"),
+			task("02", ["01"]),
+			task("03", ["02"]),
+			task("04", ["03"]),
+		);
+		const blocked = getBlockedTasks(pending, new Set(["01"]));
+		expect([...blocked].sort()).toEqual(["02", "03", "04"]);
+	});
+
+	it("does not affect tasks in separate subgraphs", () => {
+		const pending = tasksFrom(
+			task("01"),
+			task("02", ["01"]),
+			task("10"),
+			task("11", ["10"]),
+		);
+		const blocked = getBlockedTasks(pending, new Set(["01"]));
+		expect([...blocked].sort()).toEqual(["02"]);
+	});
+
+	it("returns empty set when no tasks depend on failed tasks", () => {
+		const pending = tasksFrom(task("01"), task("02"), task("03"));
+		const blocked = getBlockedTasks(pending, new Set(["99"]));
+		expect(blocked.size).toBe(0);
+	});
+});
+
+// ─── detectCycles ────────────────────────────────────────────────────────────
+
+describe("detectCycles", () => {
+	it("returns empty for acyclic graph", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02", ["01"]), task("03", ["02"])),
+		});
+		expect(detectCycles(project)).toEqual([]);
+	});
+
+	it("detects a 3-node cycle", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01", ["03"]),
+				task("02", ["01"]),
+				task("03", ["02"]),
+			),
+		});
+		const cycles = detectCycles(project);
+		expect(cycles.length).toBeGreaterThan(0);
+	});
+
+	it("detects a self-loop", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01", ["01"])),
+		});
+		const cycles = detectCycles(project);
+		expect(cycles.length).toBeGreaterThan(0);
+	});
+
+	it("detects cycle in disconnected subgraph", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"), // isolated
+				task("02", ["03"]),
+				task("03", ["02"]), // cycle
+			),
+		});
+		const cycles = detectCycles(project);
+		expect(cycles.length).toBeGreaterThan(0);
+	});
+
+	it("returns empty for graph with only diamond patterns", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["02", "03"]),
+			),
+		});
+		expect(detectCycles(project)).toEqual([]);
+	});
+});
+
+// ─── getCriticalPath ─────────────────────────────────────────────────────────
+
+describe("getCriticalPath", () => {
+	it("returns the longest path through the DAG", () => {
+		// 01 -> 02 -> 03 -> 04  (long = 4)
+		// 01 -> 05 -> 04        (short = 3)
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+				task("04", ["03", "05"]),
+				task("05", ["01"]),
+			),
+		});
+		const path = getCriticalPath(project);
+		expect(path.length).toBe(4);
+		expect(path[0].id).toBe("01");
+		expect(path[path.length - 1].id).toBe("04");
+	});
+
+	it("returns single-node path for roots", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02"), task("03")),
+		});
+		const path = getCriticalPath(project);
+		expect(path.length).toBe(1);
+	});
+
+	it("handles complex branching by picking the longest chain", () => {
+		// 01 -> 02 -> 03 -> 04 -> 05  (long = 5)
+		// 01 -> 06 -> 05               (short = 3)
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["02"]),
+				task("04", ["03"]),
+				task("05", ["04", "06"]),
+				task("06", ["01"]),
+			),
+		});
+		const path = getCriticalPath(project);
+		// Should pick 01 -> 02 -> 03 -> 04 -> 05 (length 5)
+		expect(path.length).toBe(5);
+		expect(path.map((t) => t.id)).toEqual(["01", "02", "03", "04", "05"]);
+	});
+});
+
+// ─── formatDependencyChain ───────────────────────────────────────────────────
+
+describe("formatDependencyChain", () => {
+	it("renders a simple tree", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02", ["01"])),
+		});
+		const formatted = formatDependencyChain(project);
+		expect(formatted).toContain("01");
+		expect(formatted).toContain("02");
+	});
+
+	it("mentions root tasks", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02")),
+		});
+		const formatted = formatDependencyChain(project);
+		expect(formatted).toMatch(/01.*root|root.*01/i);
+	});
+
+	it("handles empty task list", () => {
+		const project = makeProject({ tasks: [] });
+		const formatted = formatDependencyChain(project);
+		expect(formatted).toContain("no tasks");
+	});
+
+	it("shows orphan tasks when dependencies reference non-existent IDs", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01", ["99"])),
+		});
+		const formatted = formatDependencyChain(project);
+		expect(formatted).toMatch(/orphan|unreached/i);
+	});
+});
+
+// ─── formatExecutionPlan ─────────────────────────────────────────────────────
+
+describe("formatExecutionPlan", () => {
+	it("displays task counts and batches", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02", ["01"])),
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		const formatted = formatExecutionPlan(plan);
+		expect(formatted).toContain("Total tasks");
+		expect(formatted).toContain("Batches");
+		expect(formatted).toContain("01");
+		expect(formatted).toContain("02");
+	});
+
+	it("shows skipped tasks", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01", [], "completed"), task("02", ["01"])),
+		});
+		const plan = buildExecutionPlan(project, new Set(["01"]));
+		const formatted = formatExecutionPlan(plan);
+		expect(formatted).toContain("completed");
+	});
+
+	it("shows parallel group annotations when provided", () => {
+		const project = makeProject({
+			tasks: tasksFrom(task("01"), task("02", ["01"]), task("03", ["01"])),
+			parallelGroups: [{ index: 0, label: "UI sprint", taskIds: ["02", "03"] }],
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		const formatted = formatExecutionPlan(plan, project.parallelGroups);
+		expect(formatted).toContain("UI sprint");
+	});
+});
+
+// ─── Group-Aware Batching ────────────────────────────────────────────────────
+
+describe("Parallel group batching", () => {
+	it("builds batches when parallel groups are defined", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["02", "03"]),
+			),
+			parallelGroups: [
+				{ index: 0, label: "Frontend", taskIds: ["01", "02", "03", "04"] },
+			],
+		});
+		// Should route through buildGroupAwareBatches
+		const plan = buildExecutionPlan(project, new Set());
+		expect(plan.batches.length).toBeGreaterThan(0);
+	});
+
+	it("respects intra-group dependencies in parallel groups", () => {
+		// Tasks: 01 -> 02, 01 -> 03, 02 -> 04, 03 -> 04
+		// With parallel groups, there are no cross-group dependencies by definition.
+		// Intra-group deps are respected by Kahn's algorithm.
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01"),
+				task("02", ["01"]),
+				task("03", ["01"]),
+				task("04", ["02", "03"]),
+			),
+			parallelGroups: [
+				{ index: 0, label: "All", taskIds: ["01", "02", "03", "04"] },
+			],
+		});
+		const plan = buildExecutionPlan(project, new Set());
+		// Batch 0: [01], Batch 1: [02, 03], Batch 2: [04]
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[1].tasks.map((t) => t.id).sort()).toEqual(["02", "03"]);
+		expect(plan.batches[2].tasks.map((t) => t.id)).toEqual(["04"]);
+	});
+});
+
+// ─── Real-World Scenario: Resume with completed tasks ───────────────────────
+
+describe("Real-world resume scenarios", () => {
+	it("buildExecutionPlan correctly excludes file-based [x] completions", () => {
+		// Design Token PRD resume: 01,02,03 [x] in file, 04 [~], 05 [ ]
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01", [], "completed"),
+				task("02", ["01"], "completed"),
+				task("03", ["01"], "completed"),
+				task("04", ["02", "03"], "in_progress"),
+				task("05", ["04", "01"], "pending"),
+			),
+		});
+		// buildCompletedSet in index.ts produces {01, 02, 03} from file + progress
+		// This simulates what happens after buildCompletedSet is called
+		const completedFromFile = new Set(
+			project.tasks.filter((t) => t.status === "completed").map((t) => t.id),
+		);
+		const plan = buildExecutionPlan(project, completedFromFile);
+
+		// Only 04 and 05 should be pending
+		expect(plan.totalTasks).toBe(2);
+		expect(plan.batches).toHaveLength(2);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["04"]);
+		expect(plan.batches[1].tasks.map((t) => t.id)).toEqual(["05"]);
+	});
+
+	it("skipsTasks includes both progress-completed and file-completed tasks", () => {
+		const project = makeProject({
+			tasks: tasksFrom(
+				task("01", [], "completed"),
+				task("02", ["01"], "pending"),
+			),
+		});
+		// Simulate: 01 completed in file AND in progress
+		const plan = buildExecutionPlan(project, new Set(["01"]));
+		expect(plan.skippedTasks.map((t) => t.id)).toEqual(["01"]);
+		expect(plan.batches[0].tasks.map((t) => t.id)).toEqual(["02"]);
+	});
+});

tests/helpers.ts

@@ -0,0 +1,30 @@
+import * as fs from "node:fs";
+import * as path from "node:path";
+import * as os from "node:os";
+
+// ─── Helpers ────────────────────────────────────────────────────────────────
+
+/**
+ * Create a temporary directory for test files.
+ * Returns the path and a cleanup function.
+ */
+export function tempDir(): { dir: string; cleanup: () => void } {
+	const dir = fs.mkdtempSync(path.join(os.tmpdir(), "ralpi-test-"));
+	return {
+		dir,
+		cleanup: () => fs.rmSync(dir, { recursive: true, force: true }),
+	};
+}
+
+/**
+ * Write content to a temp markdown file and return its path.
+ */
+export function writeTaskFile(
+	dir: string,
+	name: string,
+	content: string,
+): string {
+	const filePath = path.join(dir, name);
+	fs.writeFileSync(filePath, content, "utf-8");
+	return filePath;
+}

tests/parser-phased.test.ts

@@ -0,0 +1,521 @@
+/**
+ * Tests for phased task format parsing
+ * Covers: phase detection, task parsing, phase boundaries, implicit dependencies
+ */
+
+import { describe, test, expect } from "bun:test";
+import { parseTaskFile } from "../src/parser";
+import type { Task } from "../src/types";
+import { tempDir, writeTaskFile } from "./helpers";
+
+/** Parse a task file from an inline template literal. */
+function parse(content: string) {
+	const { dir, cleanup } = tempDir();
+	try {
+		const filePath = writeTaskFile(dir, "README.md", content);
+		return { project: parseTaskFile(filePath), cleanup };
+	} catch (e) {
+		cleanup();
+		throw e;
+	}
+}
+
+describe("Phased task format", () => {
+	describe("Phase detection", () => {
+		test("detects phased format with markdown headings", () => {
+			const content = `# Voice Conversation
+
+## Phase 1 - MVP
+- [ ] 01 - Build voice pipeline
+- [ ] 02 - Add audio playback
+
+## Phase 2 - Streaming
+- [ ] 03 - WebSocket channel
+- [ ] 04 - Streaming STT
+
+## Dependencies
+- 02 depends on 01
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases).toBeDefined();
+				expect(project.phases?.length).toBe(2);
+				expect(project.phases?.[0].number).toBe(1);
+				expect(project.phases?.[0].title).toBe("MVP");
+				expect(project.phases?.[1].number).toBe(2);
+				expect(project.phases?.[1].title).toBe("Streaming");
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("detects phased format with plain headings", () => {
+			const content = `# Voice Conversation
+
+Phase 1 - MVP
+- [ ] 01 - Build voice pipeline
+- [ ] 02 - Add audio playback
+
+Phase 2 - Streaming
+- [ ] 03 - WebSocket channel
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases).toBeDefined();
+				expect(project.phases?.length).toBe(2);
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("supports various separators in phase headings", () => {
+			const variants = [
+				"## Phase 1 - MVP",
+				"## Phase 1 - MVP",
+				"## Phase 1 - MVP",
+				"## Phase 1: MVP",
+				"## Phase 1 -  MVP", // multiple spaces
+			];
+
+			for (const heading of variants) {
+				const content = `# Test
+
+${heading}
+- [ ] 01 - Task
+
+## Dependencies
+`;
+				const { project, cleanup } = parse(content);
+				try {
+					expect(project.phases).toBeDefined();
+					expect(project.phases?.length).toBe(1);
+				} finally {
+					cleanup();
+				}
+			}
+		});
+
+		test("handles phase headings with extra whitespace", () => {
+			const content = `# Test
+
+  ## Phase 1 - MVP
+- [ ] 01 - Task
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases).toBeDefined();
+				expect(project.phases?.length).toBe(1);
+			} finally {
+				cleanup();
+			}
+		});
+	});
+
+	describe("Task parsing within phases", () => {
+		test("assigns phase number to tasks", () => {
+			const content = `# Test
+
+## Phase 1 - MVP
+- [ ] 01 - Task A
+- [ ] 02 - Task B
+
+## Phase 2 - Enhancement
+- [ ] 03 - Task C
+- [ ] 04 - Task D
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.tasks[0].id).toBe("01");
+				expect(project.tasks[0].phase).toBe(1);
+				expect(project.tasks[1].id).toBe("02");
+				expect(project.tasks[1].phase).toBe(1);
+				expect(project.tasks[2].id).toBe("03");
+				expect(project.tasks[2].phase).toBe(2);
+				expect(project.tasks[3].id).toBe("04");
+				expect(project.tasks[3].phase).toBe(2);
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("tracks task IDs in each phase", () => {
+			const content = `# Test
+
+## Phase 1 - Foundation
+- [ ] 01 - Setup
+- [ ] 02 - Config
+
+## Phase 2 - Implementation
+- [ ] 03 - Feature A
+- [ ] 04 - Feature B
+- [ ] 05 - Feature C
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases?.[0].taskIds).toEqual(["01", "02"]);
+				expect(project.phases?.[1].taskIds).toEqual(["03", "04", "05"]);
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("handles tasks with different statuses in phases", () => {
+			const content = `# Test
+
+## Phase 1 - MVP
+- [x] 01 - Done task
+- [ ] 02 - Pending task
+- [~] 03 - In progress
+
+## Phase 2 - Next
+- [ ] 04 - Future task
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.tasks[0].status).toBe("completed");
+				expect(project.tasks[1].status).toBe("pending");
+				expect(project.tasks[2].status).toBe("in_progress");
+				expect(project.tasks[3].status).toBe("pending");
+
+				expect(project.phases?.[0].taskIds).toEqual(["01", "02", "03"]);
+				expect(project.phases?.[1].taskIds).toEqual(["04"]);
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("handles empty phases", () => {
+			const content = `# Test
+
+## Phase 1 - Empty
+
+## Phase 2 - Has tasks
+- [ ] 01 - Task
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases?.length).toBe(1);
+				expect(project.phases?.[0].number).toBe(2);
+				expect(project.phases?.[0].taskIds).toEqual(["01"]);
+			} finally {
+				cleanup();
+			}
+		});
+	});
+
+	describe("Implicit phase-boundary dependencies", () => {
+		test("adds dependency from first task of phase 2 to last task of phase 1", () => {
+			const content = `# Test
+
+## Phase 1 - MVP
+- [ ] 01 - Setup
+- [ ] 02 - Build
+
+## Phase 2 - Enhancement
+- [ ] 03 - Feature
+- [ ] 04 - Test
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				// Task 03 should depend on task 02 (implicit phase boundary)
+				expect(
+					project.tasks.find((t: Task) => t.id === "03")?.dependencies,
+				).toContain("02");
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("adds dependencies across multiple phases", () => {
+			const content = `# Test
+
+## Phase 1 - Foundation
+- [ ] 01 - Setup
+
+## Phase 2 - Core
+- [ ] 02 - Build
+- [ ] 03 - Test
+
+## Phase 3 — Polish
+- [ ] 04 — Refine
+- [ ] 05 — Release
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				// Task 02 depends on task 01 (phase 1 → 2 boundary)
+				expect(
+					project.tasks.find((t: Task) => t.id === "02")?.dependencies,
+				).toContain("01");
+
+				// Task 04 depends on task 03 (phase 2 → 3 boundary)
+				expect(
+					project.tasks.find((t: Task) => t.id === "04")?.dependencies,
+				).toContain("03");
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("does not duplicate explicit dependencies", () => {
+			const content = `# Test
+
+## Phase 1 - MVP
+- [ ] 01 - Setup
+- [ ] 02 - Build
+
+## Phase 2 — Enhancement
+- [ ] 03 — Feature
+
+## Dependencies
+- 03 depends on 02
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				const task03 = project.tasks.find((t: Task) => t.id === "03");
+				const depCount = task03?.dependencies.filter(
+					(d: string) => d === "02",
+				).length;
+				expect(depCount).toBe(1); // Should not duplicate
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("handles single phase (no boundaries)", () => {
+			const content = `# Test
+
+## Phase 1 - All tasks
+- [ ] 01 - Task A
+- [ ] 02 - Task B
+
+## Dependencies
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				// No implicit dependencies should be added
+				expect(project.tasks[0].dependencies).toEqual([]);
+				expect(project.tasks[1].dependencies).toEqual([]);
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("works alongside explicit dependencies", () => {
+			const content = `# Test
+
+## Phase 1 - MVP
+- [ ] 01 - Setup
+- [ ] 02 - Build
+
+## Phase 2 - Enhancement
+- [ ] 03 - Feature A
+- [ ] 04 - Feature B
+
+## Dependencies
+- 04 depends on 03
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				// Task 03 has implicit dependency on task 02
+				expect(
+					project.tasks.find((t: Task) => t.id === "03")?.dependencies,
+				).toContain("02");
+
+				// Task 04 has explicit dependency on task 03
+				expect(
+					project.tasks.find((t: Task) => t.id === "04")?.dependencies,
+				).toContain("03");
+
+				// Task 04 should NOT have implicit dependency on task 02
+				expect(
+					project.tasks.find((t: Task) => t.id === "04")?.dependencies,
+				).not.toContain("02");
+			} finally {
+				cleanup();
+			}
+		});
+	});
+
+	describe("Mixed formats", () => {
+		test("phased format with arrow dependencies", () => {
+			const content = `# Test
+
+## Phase 1 - Setup
+- [ ] 01 - Initialize
+- [ ] 02 - Configure
+
+## Phase 2 - Build
+- [ ] 03 - Compile
+- [ ] 04 - Bundle
+
+## Dependencies
+- 01 → 02
+- 03 → 04
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases?.length).toBe(2);
+				expect(
+					project.tasks.find((t: Task) => t.id === "02")?.dependencies,
+				).toContain("01");
+				expect(
+					project.tasks.find((t: Task) => t.id === "04")?.dependencies,
+				).toContain("03");
+				expect(
+					project.tasks.find((t: Task) => t.id === "03")?.dependencies,
+				).toContain("02");
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("phased format with parallel groups", () => {
+			const content = `# Test
+
+## Phase 1 - MVP
+- [ ] 01 - Setup
+- [ ] 02 - Build
+
+## Phase 2 - Enhancement
+- [ ] 03 - Feature
+- [ ] 04 - Test
+
+## Dependencies
+- 01, 02 can be done in parallel
+- 03, 04 can be done in parallel
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases?.length).toBe(2);
+				expect(project.parallelGroups?.length).toBe(2);
+				expect(
+					project.tasks.find((t: Task) => t.id === "03")?.dependencies,
+				).toContain("02");
+			} finally {
+				cleanup();
+			}
+		});
+
+		test("phased format with exit criteria", () => {
+			const content = `# Test
+
+## Phase 1 - MVP
+- [ ] 01 - Build
+- [ ] 02 - Test
+
+## Phase 2 - Release
+- [ ] 03 - Deploy
+
+## Dependencies
+
+## Exit Criteria
+- All tests pass
+- Deployment successful
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				expect(project.phases?.length).toBe(2);
+				expect(project.exitCriteria?.length).toBe(2);
+			} finally {
+				cleanup();
+			}
+		});
+	});
+
+	describe("Real-world example", () => {
+		test("parses voice conversation PRD correctly", () => {
+			const content = `# Voice Conversation
+
+Objective: Add full voice conversation capability
+
+## Phase 1 - Push-to-Talk MVP
+- [ ] 01 - Build voice pipeline orchestrator → \`01-voice-pipeline-orchestrator.md\`
+- [ ] 02 - Build auto-playback audio module → \`02-auto-playback-audio-module.md\`
+- [ ] 03 - Wire voice mode toggle into chat UI → \`03-voice-mode-toggle-ui.md\`
+- [ ] 04 - End-to-end push-to-talk integration test → \`04-push-to-talk-integration-test.md\`
+
+## Phase 2 - Streaming & Real-Time
+- [ ] 05 - Build WebSocket voice channel → \`05-websocket-voice-channel.md\`
+- [ ] 06 - Implement streaming STT pipeline → \`06-streaming-stt-pipeline.md\`
+- [ ] 07 - Implement streaming TTS pipeline → \`07-streaming-tts-pipeline.md\`
+
+## Phase 3 - Optimization & Hardening
+- [ ] 08 - Model quantization and VRAM budget manager → \`08-model-quantization.md\`
+- [ ] 09 - Latency profiling and pipeline optimization → \`09-latency-profiling.md\`
+
+## Dependencies
+- 02 depends on 01
+- 03 depends on 01, 02
+- 04 depends on 03
+- 06 depends on 05
+- 07 depends on 05
+- 09 depends on 08
+
+## Exit Criteria
+- Users can hold multi-turn voice conversations
+- Total round-trip latency under 3s
+`;
+			const { project, cleanup } = parse(content);
+			try {
+				// Verify phases
+				expect(project.phases?.length).toBe(3);
+				expect(project.phases?.[0].title).toBe("Push-to-Talk MVP");
+				expect(project.phases?.[1].title).toBe("Streaming & Real-Time");
+				expect(project.phases?.[2].title).toBe("Optimization & Hardening");
+
+				// Verify task phases
+				expect(project.tasks[0].phase).toBe(1);
+				expect(project.tasks[4].phase).toBe(2);
+				expect(project.tasks[7].phase).toBe(3);
+
+				// Verify phase boundaries
+				// Task 05 (first in phase 2) depends on task 04 (last in phase 1)
+				expect(
+					project.tasks.find((t: Task) => t.id === "05")?.dependencies,
+				).toContain("04");
+
+				// Task 08 (first in phase 3) depends on task 07 (last in phase 2)
+				expect(
+					project.tasks.find((t: Task) => t.id === "08")?.dependencies,
+				).toContain("07");
+
+				// Verify explicit dependencies still work
+				expect(
+					project.tasks.find((t: Task) => t.id === "02")?.dependencies,
+				).toContain("01");
+				expect(
+					project.tasks.find((t: Task) => t.id === "03")?.dependencies,
+				).toContain("01");
+				expect(
+					project.tasks.find((t: Task) => t.id === "03")?.dependencies,
+				).toContain("02");
+
+				// Verify task files
+				expect(project.tasks[0].file).toBe("01-voice-pipeline-orchestrator.md");
+				expect(project.tasks[1].file).toBe("02-auto-playback-audio-module.md");
+
+				// Verify exit criteria
+				expect(project.exitCriteria?.length).toBe(2);
+				expect(project.objective).toBe("Voice Conversation");
+			} finally {
+				cleanup();
+			}
+		});
+	});
+});

tsconfig.json

@@ -1,18 +1,15 @@
 {
   "compilerOptions": {
     "target": "ES2022",
-    "module": "commonjs",
+    "module": "ES2022",
+    "moduleResolution": "bundler",
     "lib": ["ES2022"],
-    "outDir": "./dist",
-    "rootDir": "./",
+    "noEmit": true,
     "strict": true,
     "esModuleInterop": true,
     "skipLibCheck": true,
     "forceConsistentCasingInFileNames": true,
-    "resolveJsonModule": true,
-    "declaration": true,
-    "declarationMap": true,
-    "sourceMap": true
+    "resolveJsonModule": true
   },
   "include": ["index.ts", "src/**/*"],
   "exclude": ["node_modules", "dist"]