Michael Freno 288506e84d feat(checks): add TODOs & stubs check, replace noop template ...

/pygienium-todos inventories TODO/FIXME/HACK markers and stub bodies via a
deterministic pre-scan plus the todos sub-agent; --fix converts silent
stubs (placeholder returns, empty/pass bodies) into loud failures,
never implementing TODOs or deleting markers. Replaces the noop
reference check; the extensibility suite now registers a synthetic
witness. Adds agents/todos.md and tests/todos.test.ts.

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..

agents.test.ts

Initial commit: pygenium as git submodule

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all-integration.test.ts

Initial commit: pygenium as git submodule

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all.test.ts

Initial commit: pygenium as git submodule

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check-runner.test.ts

Initial commit: pygenium as git submodule

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commands.test.ts

Initial commit: pygenium as git submodule

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comments.test.ts

Initial commit: pygenium as git submodule

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complexity.test.ts

Initial commit: pygenium as git submodule

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dead-code.test.ts

Initial commit: pygenium as git submodule

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deep-modules.test.ts

Initial commit: pygenium as git submodule

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defensive-guards.test.ts

Initial commit: pygenium as git submodule

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extensibility.test.ts

feat(checks): add TODOs & stubs check, replace noop template

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help.test.ts

Initial commit: pygenium as git submodule

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registry.test.ts

Initial commit: pygenium as git submodule

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status-resume-export.test.ts

Initial commit: pygenium as git submodule

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todos.test.ts

feat(checks): add TODOs & stubs check, replace noop template

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