# 12. /pygienium-all master orchestrator

meta:
  id: pygienium-12
  feature: pygienium
  priority: P2
  depends_on: [pygienium-07, pygienium-08, pygienium-09, pygienium-10, pygienium-11]
  tags: [orchestration]

objective:

- Implement `/pygienium-all`: run every registered check in sequence as ordered phases under a unified status strip, with resumable state and a final summary report.

deliverables:

- `src/modes/all.ts`: `runAllChecks(opts)` iterating the registry, calling `runCheck` per check with shared recon, accumulating per-check status into run-state, writing `pygienium/all-summary.md`
- `/pygienium-all` command wired in index.ts with phase strip listing all check names
- Respects `--fresh`, `--fix`, and `--only=comments,complexity` to select a subset

steps:

- Implement `runAllChecks`: init a single run (mode "all"), run shared recon once, then for each registered check call `runCheck` with the existing run-state record (not a fresh one per check)
- Build the phase strip from registry names; set initial phase to the first check
- Aggregate final summary: per-check status, artifact paths, total findings/changes counts
- Support `--only` filtering via the command-target parser

tests:

- Integration: run `/pygienium-all` on a small repo; assert every check ran, run-state shows all complete, all-summary.md present

acceptance_criteria:

- `/pygienium-all` runs every registered check exactly once in registry order
- Interrupted runs are resumable (in_progress/failed checks re-run; complete ones skipped unless `--fresh`)
- all-summary.md lists per-check outcomes

validation:

- Inspect `pygienium/run-state.json` and `pygienium/all-summary.md`

notes:

- This is the piolium "balanced"/"deep" mode analogue, but simpler: one run, sequential phases, shared recon
- Ensure scheduler is not needed (sequential) unless we later parallelize independent checks