Initial commit: pygenium as git submodule

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/**
* complexity.test.ts — integration tests for the excessive complexity check.
*
* Tests verify:
* 1. A 55-decision-point function (must-refactor band) is refactored
* 2. A 40-decision-point function (heavy-skepticism band) is either refactored
* or has a documented justification in findings.md
* 3. Deep nesting and over-abstraction are simplified
*/
import { describe, expect, it, beforeEach, afterEach } from "bun:test";
import { mkdtemp, readFile, rm, writeFile } from "node:fs/promises";
import { tmpdir } from "node:os";
import { join } from "node:path";
import {
clearChecks,
registerCheck,
type CheckDefinition,
} from "../src/checks/registry.js";
import {
setAgentRunner,
resetAgentRunner,
fakeAgentRunner,
} from "../src/agent-runner.js";
import { handleCheckCommand, type PygieniumCtx } from "../src/commands.js";
import { loadRunState } from "../src/run-state.js";
/**
* A synthetic check that simulates a complexity scan finding two functions:
* - one at complexity 55 (must-refactor band)
* - one at complexity 40 (skepticism band)
*/
function synthComplexityCheck(): CheckDefinition {
return {
name: "synth-complexity",
label: "Synth Complexity",
description: "Synthetic complexity check for integration tests",
agentName: "scanner",
fixAgentName: "fixer",
phaseId: "scan",
buildScanTask: (_cwd, scope) => {
const findings = `# complexity — findings
## Cyclomatic complexity
| File | Function | Score | Band | Action |
|------|----------|-------|------|--------|
| target/index.ts:10 | complexFunction | 55 | 50+ | MUST refactor |
| target/index.ts:100 | moderateFunction | 40 | 35-49 | Skepticism — justify or refactor |
| target/index.ts:200 | simpleFunction | 8 | <35 | OK |
## Structural smells
- [high] target/index.ts:15 — deep nesting — 5 levels of nested if/else
- [med] target/index.ts:80 — unnecessary wrapper — trivial passthrough function
`;
// fakeAgentRunner parses one directive per line, so flatten the content
// onto a single escaped line; the on-disk file keeps the real text.
const oneLine = findings.split("\n").join(" ");
return `!write pygienium/checks/synth-complexity/findings.md "${oneLine}"\n!echo ${oneLine}`;
},
buildFixTask: (_cwd, _scope, findings) => {
const changes = `# complexity — changes\n\n2 refactoring(s) applied; 0 deferred for human review.\n\n## Applied\n\n- target/index.ts:10 — complexFunction split (was 55, now 22, 28)\n- target/index.ts:15 — nested conditionals flattened\n- target/index.ts:80 — trivial wrapper inlined\n\n## Deferred (needs human review)\n\n## Justified (kept at 3549)\n\n- target/index.ts:100 — moderateFunction (40) — kept: critical routing function on main path, would require major architectural change to split\n`;
const oneLine = changes.split("\n").join(" ");
return `!write pygienium/checks/synth-complexity/changes.md "${oneLine}"\n!echo ${oneLine}`;
},
gate: async (cwd) => {
const { stat } = await import("node:fs/promises");
const { resolve } = await import("node:path");
try {
const s = await stat(resolve(cwd));
return s.isDirectory() || s.isFile()
? undefined
: `target is not a file or directory: ${resolve(cwd)}`;
} catch {
return `target path does not exist: ${resolve(cwd)}`;
}
},
};
}
function stubCtx(cwd: string): PygieniumCtx {
return { cwd, mode: "print", hasUI: false, ui: undefined } as PygieniumCtx;
}
describe("complexity check integration", () => {
let cwd: string;
beforeEach(async () => {
clearChecks();
setAgentRunner(fakeAgentRunner);
cwd = await mkdtemp(join(tmpdir(), "pygienium-complexity-"));
});
afterEach(async () => {
resetAgentRunner();
await rm(cwd, { recursive: true, force: true });
});
it("runs a complexity scan and writes findings with cyclomatic scores", async () => {
registerCheck(synthComplexityCheck());
const check = synthComplexityCheck();
await handleCheckCommand(check, "", stubCtx(cwd));
const state = await loadRunState(cwd);
expect(state).toBeDefined();
expect(state?.checks["synth-complexity"].status).toBe("complete");
// Verify findings contain complexity scores
const findings = state?.checks["synth-complexity"].findings;
expect(findings).toContain("55");
expect(findings).toContain("40");
expect(findings).toContain("MUST refactor");
});
it("--fix refactors the 50+ function and documents changes", async () => {
const check = synthComplexityCheck();
await handleCheckCommand(check, "--fix", stubCtx(cwd));
const state = await loadRunState(cwd);
expect(state?.checks["synth-complexity"].status).toBe("complete");
// Verify changes document the refactoring
const changes = state?.checks["synth-complexity"].changes;
expect(changes).toContain("complexFunction split");
expect(changes).toContain("was 55");
});
it("justified 35-49 functions appear in changes with justification", async () => {
const check = synthComplexityCheck();
await handleCheckCommand(check, "--fix", stubCtx(cwd));
const state = await loadRunState(cwd);
const changes = state?.checks["synth-complexity"].changes;
expect(changes).toContain("Justified");
expect(changes).toContain("moderateFunction");
expect(changes).toContain("critical");
});
it("marks check complete after --fix with no errors", async () => {
const check = synthComplexityCheck();
await handleCheckCommand(check, "--fix", stubCtx(cwd));
const state = await loadRunState(cwd);
expect(state?.checks["synth-complexity"].error).toBeUndefined();
expect(
state?.checks["synth-complexity"].phases.find((p) => p.id === "fix")
?.status,
).toBe("complete");
});
it("gate passes for existing target directory", async () => {
const check = synthComplexityCheck();
const gateResult = await check.gate(cwd);
expect(gateResult).toBeUndefined();
});
it("gate fails for nonexistent target", async () => {
const check = synthComplexityCheck();
const gateResult = await check.gate(
"/nonexistent/path/that/does/not/exist",
);
expect(gateResult).toContain("does not exist");
});
});