Initial commit: pygenium as git submodule

tasks/13-resume-status-export.md

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+# 13. Resume, status, and export commands
+
+meta:
+  id: pygienium-13
+  feature: pygienium
+  priority: P2
+  depends_on: [pygienium-04, pygienium-06]
+  tags: [commands]
+
+objective:
+
+- Implement the operational commands: `/pygienium-resume` (continue the most recent non-complete run), `/pygienium-status` (show run progress), and `/pygienium-export` (export findings/changes with filters).
+
+deliverables:
+
+- `/pygienium-resume`: read run-state, pick latestResumableRun, re-dispatch that run's checks (complete ones skipped unless `--fresh`)
+- `/pygienium-status`: format run-state into a readable line list (per-check status, artifacts, errors)
+- `/pygienium-export`: gather all `pygienium/checks/*/findings.md` and `changes.md` with filters (`--check=`, `--status=`, `--out=`) into a single markdown or JSON bundle
+- All three wired in index.ts
+
+steps:
+
+- Port piolium's status/resume/export command shapes, adapting to run-state and check artifacts
+- `formatRunStatus(state)` builds the status line list
+- Export walks `pygienium/checks/*/` and applies filters before writing `pygienium/export.{md|json}`
+
+tests:
+
+- Integration: start `/pygienium-all`, interrupt, run `/pygienium-status` (shows in_progress), `/pygienium-resume` (completes), `/pygienium-export`
+
+acceptance_criteria:
+
+- `/pygienium-status` reports accurate per-check progress
+- `/pygienium-resume` continues a non-complete run without re-running complete checks
+- `/pygienium-export` produces a filtered bundle
+
+validation:
+
+- Inspect `pygienium/export.md` and the status output
+
+notes:
+
+- These mirror piolium's status/resume/export almost directly; keep behavior faithful